BGC0000457: vicibactin biosynthetic gene cluster from Rhizobium etli CFN 42
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Location: 511,806 - 523,079 nt. (total: 11,274 nt).
This entry is originally from NCBI GenBank CP000138.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
History
NRPS/PKS domains
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0000457
Short description vicibactin biosynthetic gene cluster from Rhizobium etli CFN 42
Status Minimal annotation: yes
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: Unknown
Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • NRP
Loci NCBI GenBank: CP000138.1
Compounds
  • vicibactin
Species Rhizobium etli CFN 42 [taxonomy]
References
Chemical products information
vicibactin
Copy SMILES
C33H54N6O15
Chemical database entries
NPAtlas
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • RHE_PF00455
  • ABC94345.1
  • vbsP
511806 - 512525 (+) phosphopantetheinyl transferase protein
copy AA seq
copy Nt seq
  • RHE_PF00456
  • ABC94346.1
  • vbsO
512498 - 513856 (-) L-lysine 6-monooxygenase (Lysine N(6)-hydroxylase) protein
copy AA seq
copy Nt seq
  • RHE_PF00457
  • ABC94347.1
  • vbsS
513853 - 517845 (-) vicibactin biosynthesis non-ribosomal peptide synthase protein
copy AA seq
copy Nt seq
  • RHE_PF00458
  • ABC94348.1
  • vbsG
517864 - 518082 (-) polyketide synthase protein
copy AA seq
copy Nt seq
  • RHE_PF00459
  • ABC94349.1
  • vbsA
518277 - 519263 (+) N6-hydroxylysine O-acetyltransferase protein
copy AA seq
copy Nt seq
  • RHE_PF00460
  • ABC94350.1
  • vbsD
519260 - 520678 (+) efflux transporter inner membrane protein
copy AA seq
copy Nt seq
  • RHE_PF00461
  • ABC94351.1
  • vbsL
520689 - 521876 (+) cystathionine gamma-synthase protein
copy AA seq
copy Nt seq
  • RHE_PF00462
  • ABC94352.1
  • rpoI
521767 - 522423 (-) RNA polymerase sigma factor protein
copy AA seq
copy Nt seq
  • RHE_PF00463
  • ABC94353.1
  • vbsC
522588 - 523079 (+) vicibactin acetylase protein
copy AA seq
copy Nt seq
Annotation changelog
MIBiG version Submitter Notes
1.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Submitted
2.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Migrated from v1.4
  • Updated compound(s) information (NPAtlas curation)
3.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Updated bioactivity data
3.1
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Update chemical activity to schema version 2.11
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.