BGC0000540: paenibacillin biosynthetic gene cluster from Paenibacillus polymyxa OSY-DF
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Location: 1 - 11,692 nt. (total: 11,692 nt).
This entry is originally from NCBI GenBank JQ728481.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
RiPP
History
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0000540
Short description paenibacillin biosynthetic gene cluster from Paenibacillus polymyxa OSY-DF
Status Minimal annotation: yes
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: Unknown
Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • RiPP (Lanthipeptide)
Loci NCBI GenBank: JQ728481.1
Compounds
  • paenibacillin
Species Paenibacillus polymyxa OSY-DF [taxonomy]
References
Chemical products information
paenibacillin
(no structure information available)
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • AFS60100.1
  • paenA
118 - 279 (+) PaenA
copy AA seq
copy Nt seq
  • AFS60101.1
  • paenP
313 - 1287 (+) PaenP
copy AA seq
copy Nt seq
  • AFS60102.1
  • paenB
1292 - 4375 (+) PaenB
copy AA seq
copy Nt seq
  • AFS60103.1
  • paenC
4386 - 5657 (+) PaenC
copy AA seq
copy Nt seq
  • AFS60104.1
  • paenI
5673 - 6230 (+) PaenI
copy AA seq
copy Nt seq
  • AFS60105.1
  • paenT
6245 - 8038 (+) PaenT
copy AA seq
copy Nt seq
  • AFS60106.1
  • agrB
8231 - 8644 (+) AgrB
copy AA seq
copy Nt seq
  • AFS60107.1
  • agrD
8613 - 8786 (+) AgrD
copy AA seq
copy Nt seq
  • AFS60108.1
  • agrA
8783 - 10111 (+) histidine kinase
copy AA seq
copy Nt seq
  • AFS60109.1
  • agrC
10153 - 10887 (+) AgrC
copy AA seq
copy Nt seq
  • AFS60110.1
  • paenN
10922 - 11692 (+) PaenN
copy AA seq
copy Nt seq
RiPP-specific information
Subclass Lanthipeptide
Cyclic? no
Annotation changelog
MIBiG version Submitter Notes
1.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Submitted
2.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Migrated from v1.4
3.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Updated bioactivity data
3.1
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Update chemical activity to schema version 2.11
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.