BGC0000793: lipopolysaccharide oligosaccharide biosynthetic gene cluster from Salmonella enterica subsp. arizonae
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 1 - 11,783 nt. (total: 11,783 nt).
This entry is originally from NCBI GenBank AF511116.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
Biosynthesis
History
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0000793
Short description lipopolysaccharide oligosaccharide biosynthetic gene cluster from Salmonella enterica subsp. arizonae
Status Quality: questionable
The quality level of this entry.

Status: active
The status of this entry.

Completeness: unknown
Whether the entry covers everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • saccharide (None)
Loci
AF511116.1
via
Compounds
  • lipopolysaccharide oligosaccharide
Species Salmonella enterica subsp. arizonae [taxonomy]
References
Chemical products information
lipopolysaccharide oligosaccharide Evidence:
(no structure information available)
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • AAM48160.1
  • waaL
 143 - 1354 (+) WaaL
    copy AA seq
    copy Nt seq
    • AAM48161.1
    • waaZ
    		 1747 - 2556 (-) WaaZ
      copy AA seq
      copy Nt seq
      • AAM48162.1
      • waaY
      		 2706 - 3404 (-) WaaY
        copy AA seq
        copy Nt seq
        • AAM48163.1
        • waaJ
        		 3427 - 4437 (-) WaaJ
          copy AA seq
          copy Nt seq
          • AAM48164.1
          • waaI
          		 4455 - 5471 (-) WaaI
            copy AA seq
            copy Nt seq
            • AAM48165.1
            • waaB
            		 5477 - 6568 (-) WaaB
              copy AA seq
              copy Nt seq
              • AAM48166.1
              • waaH
              		 6642 - 7583 (-) WaaH
                copy AA seq
                copy Nt seq
                • AAM48167.1
                • waaP
                		 7620 - 8417 (-) WaaP
                  copy AA seq
                  copy Nt seq
                  • AAM48168.1
                  • waaG
                  		 8410 - 9534 (-) WaaG
                    copy AA seq
                    copy Nt seq
                    • AAM48169.1
                    • waaQ
                    		 9531 - 10565 (-) WaaQ
                      copy AA seq
                      copy Nt seq
                      Biosynthesis information
                      Annotation changelog

                      Entry version: 2

                      Date
                      Changes
                      Submitters
                      Reviewers
                      2019-10-16
                      Migrated from v1.4
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                      2019-10-16
                      Updated reference publication(s) (MIBiG Annotathon)
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

                      Entry version: 1

                      Date
                      Changes
                      Submitters
                      Reviewers
                      2015-06-12
                      Submitted
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                      Similar known gene clusters from MIBiG 4.0
                      Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
                      Click on reference genes to show details of similarities to genes within the current region.
                      Click on an accession to open that entry in the MiBIG database.