BGC0001313

BGC0001313: arabidiol-baruol biosynthetic gene cluster from Arabidopsis thaliana

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Location: 8,730,000 - 8,820,000 nt. (total: 90,001 nt).
This entry is originally from NCBI GenBank NC_003075.7, but has been modified (see Modifications tab for details).

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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Gene details

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General

Compounds

Genes

Biosynthesis

History

KnownClusterBlast

Modifications

General information about the BGC

MIBiG accession	BGC0001313
Short description	arabidiol-baruol biosynthetic gene cluster from Arabidopsis thaliana
Status	Quality: questionable The quality level of this entry. Status: active The status of this entry. Completeness: unknown Whether the entry covers everything needed for the pathway producing the compound(s)
Biosynthetic class(es)	terpene (Unknown)
Loci	NC_003075.7 8730000 - 8820000 via
Compounds	arabidiol-baruol
Species	Arabidopsis thaliana [taxonomy]
References	[1] An effective strategy for exploring unknown metabolic pathways by genome mining. Castillo DA et al., J Am Chem Soc (2013) PMID:23570231

Chemical products information

arabidiol-baruol Evidence:

(no structure information available)

List of genes involved in compound(s) production

Identifiers	Position	Product	Extra
AT4G15300_rename2 NP_193265.1 CYP702A2	8730723 - 8732748 (-)	cytochrome P450, family 702, subfamily A, polypeptide 2	copy AA seq copy Nt seq
AT4G15300_rename1 NP_001328761.1 CYP702A2	8730723 - 8732748 (-)	cytochrome P450, family 702, subfamily A, polypeptide 2	copy AA seq copy Nt seq
AT4G15300 NP_001328760.1 CYP702A2	8730723 - 8732778 (-)	cytochrome P450, family 702, subfamily A, polypeptide 2	copy AA seq copy Nt seq
AT4G15310 NP_193266.2 CYP702A3	8736721 - 8740047 (+)	cytochrome P450, family 702, subfamily A, polypeptide 3	copy AA seq copy Nt seq
AT4G15320_rename1 NP_193267.1 CSLB06	8742639 - 8747981 (-)	cellulose synthase-like B6	copy AA seq copy Nt seq
AT4G15320 NP_001328692.1 CSLB06	8742639 - 8747981 (-)	cellulose synthase-like B6	copy AA seq copy Nt seq
AT4G15320_rename3 NP_001328693.1 CSLB06	8744333 - 8747981 (-)	cellulose synthase-like B6	copy AA seq copy Nt seq
AT4G15320_rename2 NP_001328691.1 CSLB06	8744333 - 8747981 (-)	cellulose synthase-like B6	copy AA seq copy Nt seq
AT4G15320_rename4 NP_001328694.1 CSLB06	8744348 - 8747981 (-)	cellulose synthase-like B6	copy AA seq copy Nt seq
AT4G15330_rename1 NP_193268.3 CYP705A1	8751523 - 8753134 (-)	cytochrome P450, family 705, subfamily A, polypeptide 1	copy AA seq copy Nt seq
AT4G15330 NP_001329686.1 CYP705A1	8751523 - 8753134 (-)	cytochrome P450, family 705, subfamily A, polypeptide 1	copy AA seq copy Nt seq
AT4G15340 NP_567462.1 PEN1	8754670 - 8760589 (-)	pentacyclic triterpene synthase 1	copy AA seq copy Nt seq
AT4G15340_rename1 NP_001328610.1 PEN1	8755520 - 8760589 (-)	pentacyclic triterpene synthase 1	copy AA seq copy Nt seq
AT4G15350 NP_193270.1 CYP705A2	8762953 - 8764563 (+)	cytochrome P450, family 705, subfamily A, polypeptide 2	copy AA seq copy Nt seq
AT4G15360 NP_193271.5 CYP705A3	8770185 - 8771852 (+)	cytochrome P450, family 705, subfamily A, polypeptide 3	copy AA seq copy Nt seq
AT4G15370_rename1 NP_193272.1 BARS1	8773786 - 8779685 (-)	baruol synthase 1	copy AA seq copy Nt seq
AT4G15370 NP_001329547.1 BARS1	8773786 - 8779685 (-)	baruol synthase 1	copy AA seq copy Nt seq
AT4G15380 NP_193273.1 CYP705A4	8788762 - 8790391 (+)	cytochrome P450, family 705, subfamily A, polypeptide 4	copy AA seq copy Nt seq
AT4G15390 NP_001329485.1	8792941 - 8794281 (-)	HXXXD-type acyl-transferase family protein	copy AA seq copy Nt seq
AT4G15393_rename2 NP_001078394.1 CYP702A5	8804158 - 8806723 (+)	cytochrome P450, family 702, subfamily A, polypeptide 5	copy AA seq copy Nt seq
AT4G15393_rename1 NP_680695.2 CYP702A5	8804158 - 8806723 (+)	cytochrome P450, family 702, subfamily A, polypeptide 5	copy AA seq copy Nt seq
AT4G15393 NP_001078393.1 CYP702A5	8804158 - 8807016 (+)	cytochrome P450, family 702, subfamily A, polypeptide 5	copy AA seq copy Nt seq
AT4G15396_rename3 NP_001329486.1 CYP702A6	8807574 - 8810007 (+)	cytochrome P450, family 702, subfamily A, polypeptide 6	copy AA seq copy Nt seq
AT4G15396_rename2 NP_001329487.1 CYP702A6	8807574 - 8810274 (+)	cytochrome P450, family 702, subfamily A, polypeptide 6	copy AA seq copy Nt seq
AT4G15396_rename1 NP_001329488.1 CYP702A6	8807574 - 8810419 (+)	cytochrome P450, family 702, subfamily A, polypeptide 6	copy AA seq copy Nt seq
AT4G15396 NP_680696.2 CYP702A6	8807574 - 8810419 (+)	cytochrome P450, family 702, subfamily A, polypeptide 6	copy AA seq copy Nt seq
AT4G15400 NP_193275.1 BIA1	8812121 - 8813428 (-)	HXXXD-type acyl-transferase family protein	copy AA seq copy Nt seq
AT4G15410 NP_567463.1 PUX5	8814868 - 8816596 (+)	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma	copy AA seq copy Nt seq
AT4G15415_rename1 NP_001328412.1 ATB__GAMMA	8817707 - 8819014 (+)	Protein phosphatase 2A regulatory B subunit family protein	copy AA seq copy Nt seq
AT4G15415 NP_001319949.1 ATB__GAMMA	8817707 - 8819349 (+)	Protein phosphatase 2A regulatory B subunit family protein	copy AA seq copy Nt seq

Biosynthesis information

Annotation changelog

Entry version: 2

Date

Changes

Submitters

Reviewers

2019-10-16

Migrated from v1.4

(ID: AAAAAAAAAAAAAAAAAAAAAAAA)

(ID: AAAAAAAAAAAAAAAAAAAAAAAA)

Entry version: 1

Date

Changes

Submitters

Reviewers

2016-09-03

Submitted

(ID: AAAAAAAAAAAAAAAAAAAAAAAA)

(ID: AAAAAAAAAAAAAAAAAAAAAAAA)

Similar known gene clusters from MIBiG 4.0

Modifications to original record

renamed CDS with name AT4G15300 at join{[8732569:8732748](-), [8732151:8732467](-), [8731867:8732017](-), [8731440:8731779](-), [8731159:8731342](-), [8730931:8731059](-), [8730722:8730825](-)} to AT4G15300_rename1 to avoid duplicates
renamed CDS with name AT4G15300 at join{[8732534:8732748](-), [8732151:8732456](-), [8731865:8732017](-), [8731440:8731819](-), [8731159:8731342](-), [8730931:8731059](-), [8730722:8730825](-)} to AT4G15300_rename2 to avoid duplicates
renamed CDS with name AT4G15320 at join{[8747718:8747981](-), [8747069:8747388](-), [8746668:8746923](-), [8746466:8746626](-), [8746074:8746376](-), [8745835:8745971](-), [8745544:8745723](-), [8745015:8745360](-), [8744825:8744920](-), [8744625:8744783](-), [8744469:8744550](-), [8742638:8742832](-)} to AT4G15320_rename1 to avoid duplicates
renamed CDS with name AT4G15320 at join{[8747718:8747981](-), [8747069:8747388](-), [8746752:8746878](-), [8746503:8746626](-), [8746074:8746275](-), [8745835:8745971](-), [8745544:8745723](-), [8745015:8745360](-), [8744332:8744920](-)} to AT4G15320_rename2 to avoid duplicates
renamed CDS with name AT4G15320 at join{[8747718:8747981](-), [8747069:8747388](-), [8746752:8746923](-), [8746503:8746626](-), [8746074:8746275](-), [8745835:8745971](-), [8745544:8745723](-), [8745015:8745360](-), [8744332:8744920](-)} to AT4G15320_rename3 to avoid duplicates
renamed CDS with name AT4G15320 at join{[8747718:8747981](-), [8747069:8747388](-), [8746752:8746878](-), [8746503:8746626](-), [8746074:8746275](-), [8745835:8745971](-), [8745544:8745723](-), [8745015:8745360](-), [<8744347:8744920](-)} to AT4G15320_rename4 to avoid duplicates
renamed CDS with name AT4G15330 at join{[8752228:8753134](-), [8751522:8752158](-)} to AT4G15330_rename1 to avoid duplicates
renamed CDS with name AT4G15340 at join{[8760385:8760589](-), [8760085:8760271](-), [8759893:8759983](-), [8759600:8759804](-), [8759437:8759522](-), [8758468:8758635](-), [8757661:8757853](-), [8757478:8757592](-), [8757077:8757329](-), [8756898:8756997](-), [8755703:8755760](-), [8755519:8755618](-)} to AT4G15340_rename1 to avoid duplicates
renamed CDS with name AT4G15370 at join{[8779481:8779685](-), [8779197:8779383](-), [8779002:8779092](-), [8778465:8778666](-), [8778151:8778236](-), [8777877:8778044](-), [8776414:8776615](-), [8776211:8776325](-), [8775838:8776090](-), [8775645:8775744](-), [8774774:8774823](-), [8774646:8774680](-), [8774059:8774546](-), [8773785:8773896](-)} to AT4G15370_rename1 to avoid duplicates
removed an exact duplicate of CDS feature AT4G15390
renamed CDS with name AT4G15393 at join{[8804157:8804366](+), [8804886:8805199](+), [8805306:8805456](+), [8805712:8806051](+), [8806430:8806613](+), [8806717:8806723](+)} to AT4G15393_rename1 to avoid duplicates
renamed CDS with name AT4G15393 at join{[8804157:8804366](+), [8804886:8804987](+), [8805086:8805199](+), [8805306:8805456](+), [8805712:8806051](+), [8806430:8806613](+), [8806717:8806723](+)} to AT4G15393_rename2 to avoid duplicates
renamed CDS with name AT4G15396 at join{[8807573:8807782](+), [8808412:8808725](+), [8808822:8808972](+), [8809245:8809590](+), [8809815:8809891](+), [8809954:8809998](+), [8810094:8810222](+), [8810319:8810419](+)} to AT4G15396_rename1 to avoid duplicates
renamed CDS with name AT4G15396 at join{[8807573:8807782](+), [8808412:8808725](+), [8808822:8808972](+), [8809245:8809590](+), [8809815:8809998](+), [8810094:8810274](+)} to AT4G15396_rename2 to avoid duplicates
renamed CDS with name AT4G15396 at join{[8807573:8807782](+), [8808412:8808725](+), [8808822:8808972](+), [8809245:8809590](+), [8809815:8810007](+)} to AT4G15396_rename3 to avoid duplicates
removed an exact duplicate of CDS feature AT4G15415
removed an exact duplicate of CDS feature AT4G15415
removed an exact duplicate of CDS feature AT4G15415
renamed CDS with name AT4G15415 at [8817706:8819014](+) to AT4G15415_rename1 to avoid duplicates