BGC0001476: pseudouridimycin biosynthetic gene cluster from Streptomyces sp.
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Location: 1 - 17,700 nt. (total: 17,700 nt).
This entry is originally from NCBI GenBank MG266907.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
History
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0001476
Short description pseudouridimycin biosynthetic gene cluster from Streptomyces sp.
Status Minimal annotation: no
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: complete
Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • Other (Nucleoside)
Loci NCBI GenBank: MG266907.1
Compounds
  • pseudouridimycin
Species Streptomyces sp. [taxonomy]
References
Chemical products information
pseudouridimycin [synonyms: pum]
Copy SMILES
C17H26N8O9
Chemical database entries
NPAtlas
ChemSpider
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • AVT42371.1
  • pumA
220 - 624 (-) pumA
  • Unknown
Sequence-based prediction
copy AA seq
copy Nt seq
  • AVT42372.1
  • pumB
621 - 1811 (-) putative transporter
  • Transport
Sequence-based prediction
copy AA seq
copy Nt seq
  • AVT42373.1
  • pumC
1884 - 2642 (+) DeoR family transcriptional regulator
  • Other enzymatic
Sequence-based prediction
copy AA seq
copy Nt seq
  • AVT42386.1
  • pumD
2647 - 3249 (+) HAD family hydrolase
  • Unknown
Sequence-based prediction
copy AA seq
copy Nt seq
  • AVT42374.1
  • pumE
3576 - 4832 (-) flavin-dependent oxidoreductase
  • Scaffold biosynthesis
Knock-out
copy AA seq
copy Nt seq
  • AVT42375.1
  • pumF
5029 - 5838 (+) pumF
  • Unknown
Sequence-based prediction
copy AA seq
copy Nt seq
  • AVT42376.1
  • pumG
5774 - 7096 (-) PLP-dependent aspartate aminotransferase
  • Precursor biosynthesis
Knock-out
copy AA seq
copy Nt seq
  • AVT42377.1
  • pumH
7158 - 7859 (+) adenylate kinase
  • Precursor biosynthesis
Sequence-based prediction
copy AA seq
copy Nt seq
  • AVT42378.1
  • pumI
7840 - 9447 (+) glucose-methanol-choline oxidoreductase
  • Precursor biosynthesis
Knock-out
copy AA seq
copy Nt seq
  • AVT42379.1
  • pumJ
9444 - 10472 (+) tRNA pseudouridine synthase TruD
  • Precursor biosynthesis
Knock-out
copy AA seq
copy Nt seq
  • AVT42380.1
  • pumK
10581 - 11789 (+) ATP-grasp domain protein
  • Scaffold biosynthesis
Knock-out
copy AA seq
copy Nt seq
  • AVT42381.1
  • pumL
11774 - 13045 (+) major facilitator superfamily protein
  • Transport
Sequence-based prediction
copy AA seq
copy Nt seq
  • AVT42382.1
  • pumM
13042 - 14475 (+) D-alanine-D-alanine ligase
  • Scaffold biosynthesis
Knock-out
copy AA seq
copy Nt seq
  • AVT42383.1
  • pumN
14501 - 15643 (+) amidinotransferase
  • Scaffold biosynthesis
Knock-out
copy AA seq
copy Nt seq
  • AVT42384.1
  • pumO
15726 - 16358 (-) pumO
  • Unknown
Sequence-based prediction
copy AA seq
copy Nt seq
  • AVT42385.1
  • pumP
16556 - 17038 (-) HAD family hydrolase
  • Unknown
Sequence-based prediction
copy AA seq
copy Nt seq
Annotation changelog
MIBiG version Submitter Notes
1.4
  • Hidden contributor (ID: LOOLDPJUN4VZBEJ3W5R2EHIG, no GDPR consent given).
  • Submitted
2.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Migrated from v1.4
  • Updated compound(s) information (NPAtlas curation)
3.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Fix incorrect publication
3.1
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Update chemical activity to schema version 2.11
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.