BGC0002906: arabidiol biosynthetic gene cluster from Arabidopsis thaliana
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Location: 8,730,499 - 8,813,593 nt. (total: 83,095 nt).
This entry is originally from NCBI GenBank NC_003076, but has been modified (see Modifications tab for details).

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core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
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General
Compounds
Genes
Biosynthesis
History
KnownClusterBlast
Modifications
General information about the BGC
MIBiG accession BGC0002906
Short description arabidiol biosynthetic gene cluster from Arabidopsis thaliana
Status Quality: high
The quality level of this entry.

Status: pending
The status of this entry.

Completeness: complete
Whether the entry covers everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • terpene (Triterpene)
Loci
NC_003076
8730499 - 8813593
via Heterologous expression [2]
Compounds
  • arabidiol
  • baruol
Species Arabidopsis thaliana [taxonomy]
References
Chemical products information
arabidiol [synonyms: 5E)-2-hydroxy-6, 3aR, 9bR)-3-[(2R, 9a-tetramethyldodecahydro-1H-cyclopenta[a]naphthalen-7-ol, 10-dimethylundeca-5, 14-diol, (3R, (13R)-malabarica-17, 5aR, 21-diene-3beta, 9aR, 7S, 6, 9-dien-2-yl]-3a] Evidence: Mass spectrometry [2]
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C30H52O2
Chemical database entries
PubCHEM
ChEBI
baruol [synonyms: 6a, 4aS, 21-dien-3-ol, 3, 8, 10b, 6aS, 4b, 4a, 9, (2S, 4, 11-hexadecahydrochrysen-2-ol, 10bS)-1, 2, 10a, D:B-friedobaccharan-5, 1, 10a-hexamethyl-8-(4-methylpent-3-en-1-yl)-1, 8R, 10, 10aR, 6, 7, 4bR, 5] Evidence: Mass spectrometry [1]
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C30H50O1
Chemical database entries
PubCHEM
ChEBI
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • AT5G25220_rename1
  • NP_001031938.1
  • KNAT3
 8736208 - 8738087 (+) homeobox protein knotted-1-like 3
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    • AT5G25220
    • NP_197904.1
    • KNAT3
    		 8736208 - 8738115 (+) homeobox protein knotted-1-like 3
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      • AT5G25230
      • NP_001318643.1
      		 8739709 - 8743594 (+) Ribosomal protein S5/Elongation factor G/III/V family protein
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        • AT5G25240
        • NP_197906.1
        		 8746779 - 8747174 (-) stress induced protein
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          • AT5G25250
          • NP_197907.1
          • FLOT1
          		 8749774 - 8751430 (+) SPFH/Band 7/PHB domain-containing membrane-associated protein family
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            • AT5G25260
            • NP_197908.1
            		 8752751 - 8754282 (+) SPFH/Band 7/PHB domain-containing membrane-associated protein family
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              • AT5G25265
              • NP_680219.1
              		 8754794 - 8756855 (-) Hyp O-arabinosyltransferase-like protein
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                • AT5G25270
                • NP_001318644.1
                		 8757783 - 8762002 (-) Ubiquitin-like superfamily protein
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                  • AT5G25280
                  • NP_001332588.1
                  		 8773882 - 8774544 (+) serine-rich protein-like protein
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                    • AT5G25290
                    • NP_197911.1
                    		 8778592 - 8779785 (+) F-box protein (DUF295)
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                      • AT5G25300
                      • NP_197912.4
                      		 8780258 - 8783093 (+) F-box protein
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                        • AT5G25310
                        • NP_197913.4
                        		 8784820 - 8787235 (+) Exostosin family protein
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                          • AT5G25320_rename1
                          • NP_001330098.1
                          		 8787403 - 8789209 (-) ACT-like superfamily protein
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                            • AT5G25320
                            • NP_197914.1
                            		 8787403 - 8789530 (-) ACT-like superfamily protein
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                              • AT5G25320_rename2
                              • NP_001330097.1
                              		 8787865 - 8789530 (-) ACT-like superfamily protein
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                                • AT5G25330
                                • NP_197915.1
                                		 8791564 - 8792664 (+) Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
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                                  • AT5G25340
                                  • NP_197916.1
                                  		 8793238 - 8794211 (+) Ubiquitin-like superfamily protein
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                                    • AT5G25350
                                    • NP_197917.1
                                    • EBF2
                                    		 8794842 - 8796882 (-) EIN3-binding F box protein 2
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                                      • AT5G25360_rename1
                                      • NP_001330286.1
                                      		 8799934 - 8802161 (-) uncharacterized protein
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                                        • AT5G25360
                                        • NP_197918.1
                                        		 8799934 - 8802333 (-) uncharacterized protein
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                                          • AT5G25370_rename1
                                          • NP_001331648.1
                                          • PLDALPHA3
                                          		 8804240 - 8807237 (-) phospholipase D alpha 3
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                                            • AT5G25370
                                            • NP_001318645.1
                                            • PLDALPHA3
                                            		 8804240 - 8807547 (-) phospholipase D alpha 3
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                                              Biosynthesis information

                                              No biosynthesis information available for this record.

                                              Annotation changelog

                                              Entry version: 1

                                              Date
                                              Changes
                                              Submitters
                                              Reviewers
                                              2024-07-23
                                              MIBiG v4 annotathon
                                              • (ID: AP4OPPCC6CSE5F433WMY7TMD)
                                              • (ID: Q4G2APLPZNOU4XV72H6GYP54)
                                              • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
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                                              No significant matches found.

                                              Modifications to original record
                                              • renamed CDS with name AT5G25220 at join{[8736207:8736888](+), [8737163:8737284](+), [8737372:8737557](+), [8737634:8737766](+), [8737844:8737981](+), [8738083:8738087](+)} to AT5G25220_rename1 to avoid duplicates
                                              • removed an exact duplicate of CDS feature AT5G25230
                                              • removed an exact duplicate of CDS feature AT5G25280
                                              • removed an exact duplicate of CDS feature AT5G25280
                                              • renamed CDS with name AT5G25320 at join{[8789088:8789209](-), [8788931:8788999](-), [8788136:8788844](-), [8787949:8788054](-), [8787402:8787786](-)} to AT5G25320_rename1 to avoid duplicates
                                              • renamed CDS with name AT5G25320 at join{[8789459:8789530](-), [8789301:8789353](-), [8789088:8789203](-), [8788931:8788999](-), [8788136:8788844](-), [8787949:8788054](-), [8787864:8787879](-)} to AT5G25320_rename2 to avoid duplicates
                                              • removed an exact duplicate of CDS feature AT5G25360
                                              • renamed CDS with name AT5G25360 at join{[8801964:8802161](-), [8801504:8801749](-), [8800764:8800852](-), [8800068:8800135](-), [8799933:8799987](-)} to AT5G25360_rename1 to avoid duplicates
                                              • removed an exact duplicate of CDS feature AT5G25370
                                              • removed an exact duplicate of CDS feature AT5G25370
                                              • renamed CDS with name AT5G25370 at join{[8806153:8807237](-), [8805048:8805756](-), [8804239:8804685](-)} to AT5G25370_rename1 to avoid duplicates