BGC0000256: pradimicin-A biosynthetic gene cluster from Actinomadura hibisca
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 1 - 37,100 nt. (total: 37,100 nt).
This entry is originally from NCBI GenBank EF151801.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
Biosynthesis
History
NRPS/PKS domains
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0000256
Short description pradimicin-A biosynthetic gene cluster from Actinomadura hibisca
Status Quality: questionable
The quality level of this entry.

Status: active
The status of this entry.

Completeness: unknown
Whether the entry covers everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • PKS (Unknown)
Loci
EF151801.1
via
Compounds
  • pradimicin-A
Species Actinomadura hibisca [taxonomy]
References
Chemical products information
pradimicin-A Evidence:
Copy SMILES
C40H44N2O18
Chemical database entries
NPAtlas
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • ABM21735.1
  • pdmP1
 368 - 1714 (-) PdmP1
    copy AA seq
    copy Nt seq
    • ABM21736.1
    • pdmP2
    		 1737 - 2198 (-) PdmP2
      copy AA seq
      copy Nt seq
      • ABM21737.1
      • pdmP3
      		 2357 - 4018 (-) PdmP3
        copy AA seq
        copy Nt seq
        • ABM21738.1
        • pdmY
        		 4053 - 5045 (-) PdmY
          copy AA seq
          copy Nt seq
          • ABM21739.1
          • pdmX
          		 5042 - 6109 (-) PdmX
            copy AA seq
            copy Nt seq
            • ABM21740.1
            • pdmW
            		 6106 - 7311 (-) PdmW
              copy AA seq
              copy Nt seq
              • ABM21741.1
              • pdmV
              		 7493 - 8488 (+) PdmV
                copy AA seq
                copy Nt seq
                • ABM21742.1
                • pdmU
                		 8581 - 9711 (+) PdmU
                  copy AA seq
                  copy Nt seq
                  • ABK58689.1
                  • pdmT
                  		 9759 - 10778 (-) PdmT
                    copy AA seq
                    copy Nt seq
                    • ABK58688.1
                    • pdmS
                    		 10973 - 12286 (+) PdmS
                      copy AA seq
                      copy Nt seq
                      • ABM21743.1
                      • pdmO
                      		 12298 - 13014 (+) PdmO
                        copy AA seq
                        copy Nt seq
                        • ABK58687.1
                        • pdmQ
                        		 14468 - 15775 (-) PdmQ
                          copy AA seq
                          copy Nt seq
                          • ABM21744.1
                          • pdmR1
                          		 15826 - 16869 (+) PdmR1
                            copy AA seq
                            copy Nt seq
                            • ABM21745.1
                            • pdmR2
                            		 16866 - 17645 (+) PdmR2
                              copy AA seq
                              copy Nt seq
                              • ABK58686.1
                              • pdmN
                              		 17704 - 19566 (-) PdmN
                                copy AA seq
                                copy Nt seq
                                • ABM21746.1
                                • pdmM
                                		 19582 - 20043 (-) PdmM
                                  copy AA seq
                                  copy Nt seq
                                  • ABK58685.1
                                  • pdmL
                                  		 20643 - 21086 (+) PdmL
                                    copy AA seq
                                    copy Nt seq
                                    • ABM21747.1
                                    • pdmA
                                    		 21083 - 22360 (+) PdmA
                                      copy AA seq
                                      copy Nt seq
                                      • ABM21748.1
                                      • pdmB
                                      		 22402 - 23580 (+) PdmB
                                        copy AA seq
                                        copy Nt seq
                                        • ABM21749.1
                                        • pdmC
                                        		 23605 - 23868 (+) PdmC
                                          copy AA seq
                                          copy Nt seq
                                          • ABM21750.1
                                          • pdmD
                                          		 23865 - 24326 (+) PdmD
                                            copy AA seq
                                            copy Nt seq
                                            • ABM21751.1
                                            • pdmE
                                            		 24323 - 24784 (+) PdmE
                                              copy AA seq
                                              copy Nt seq
                                              • ABM21752.1
                                              • pdmF
                                              		 24805 - 25830 (+) PdmF
                                                copy AA seq
                                                copy Nt seq
                                                • ABM21753.1
                                                • pdmG
                                                		 25868 - 26608 (+) PdmG
                                                  copy AA seq
                                                  copy Nt seq
                                                  • ABM21754.1
                                                  • pdmH
                                                  		 26605 - 26946 (+) PdmH
                                                    copy AA seq
                                                    copy Nt seq
                                                    • ABM21755.1
                                                    • pdmI
                                                    		 26943 - 27254 (+) PdmI
                                                      copy AA seq
                                                      copy Nt seq
                                                      • ABM21756.1
                                                      • pdmJ
                                                      		 27310 - 28545 (-) PdmJ
                                                        copy AA seq
                                                        copy Nt seq
                                                        • ABM21757.1
                                                        • pdmK
                                                        		 28679 - 29023 (+) PdmK
                                                          copy AA seq
                                                          copy Nt seq
                                                          Biosynthesis information
                                                          Annotation changelog

                                                          Entry version: 2

                                                          Date
                                                          Changes
                                                          Submitters
                                                          Reviewers
                                                          2019-10-16
                                                          Migrated from v1.4
                                                          • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                          • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                          2019-10-16
                                                          Updated reference publication(s) (MIBiG Annotathon)
                                                          • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                          • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                          2019-10-16
                                                          Updated compound(s) information (NPAtlas curation)
                                                          • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                          • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

                                                          Entry version: 1

                                                          Date
                                                          Changes
                                                          Submitters
                                                          Reviewers
                                                          2015-06-12
                                                          Submitted
                                                          • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                          • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                          Detailed domain annotation
                                                          Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
                                                          A domain glossary is available here, and an explanation of the visualisation is available here.
                                                          Selected features only
                                                          Show module domains
                                                          Similar known gene clusters from MIBiG 4.0
                                                          Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
                                                          Click on reference genes to show details of similarities to genes within the current region.
                                                          Click on an accession to open that entry in the MiBIG database.