BGC0000435: syringafactin biosynthetic gene cluster from Pseudomonas syringae pv. tomato str. DC3000
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Location: 3,151,815 - 3,184,002 nt. (total: 32,188 nt).
This entry is originally from NCBI GenBank AE016853.1.

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core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
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Gene details
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General
Compounds
Genes
NRP
History
NRPS/PKS domains
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0000435
Short description syringafactin biosynthetic gene cluster from Pseudomonas syringae pv. tomato str. DC3000
Status Minimal annotation: no
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: Unknown
Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • NRP
Loci NCBI GenBank: AE016853.1
Compounds
  • syringafactin
Species Pseudomonas syringae pv. tomato str. DC3000 [taxonomy]
References
Chemical products information
syringafactin
(no structure information available)
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • PSPTO_2828
  • AAO56327.1
  • syrR
 3151815 - 3152588 (-) transcriptional regulator SyrR
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  • PSPTO_2829
  • AAO56328.1
  • syfA
 3152879 - 3162385 (+) non-ribosomal peptide synthetase SyfA
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  • PSPTO_2830
  • AAO56329.1
  • syfB
 3162382 - 3180171 (+) non-ribosomal peptide synthetase SyfB
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  • PSPTO_2831
  • AAO56330.1
  • syfC
 3180168 - 3181319 (+) syringafactin efflux protein SyfC
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  • PSPTO_2832
  • AAO56331.1
  • syfD
 3181322 - 3183328 (+) syringafactin efflux protein SyfD
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  • PSPTO_2833
  • AAO56332.1
 3183334 - 3184002 (-) transcriptional regulator, LuxR family
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NRP-specific information
Subclass N/A
Cyclic? no
NRP-synthases
Gene Modules
syfA
Module ?
Specificity: leucine
Evidence for specificity:
  • Mass spectrometry
  • Structure-based inference
Module ?
Specificity: leucine
Evidence for specificity:
  • Mass spectrometry
  • Structure-based inference
Module ?
Specificity: glutamine
Evidence for specificity:
  • Mass spectrometry
  • Structure-based inference
syfB
Module ?
Specificity: leucine
Evidence for specificity:
  • Mass spectrometry
  • Structure-based inference
Module ?
Specificity: threonine
Evidence for specificity:
  • Mass spectrometry
  • Structure-based inference
Module ?
Specificity: valine
Evidence for specificity:
  • Mass spectrometry
  • Structure-based inference
Module ?
Specificity: leucine
Evidence for specificity:
  • Mass spectrometry
  • Structure-based inference
Module ?
Specificity: leucine
Evidence for specificity:
  • Mass spectrometry
  • Structure-based inference
Annotation changelog
MIBiG version Submitter Notes
1.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Submitted
2.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Migrated from v1.4
3.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Updated bioactivity data
  • Added NRP substrate specificities
3.1
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Update chemical activity to schema version 2.11
Detailed domain annotation
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