BGC0000774: lipopolysaccharide biosynthetic gene cluster from Xanthomonas campestris pv. campestris
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Location: 1 - 37,753 nt. (total: 37,753 nt).
This entry is originally from NCBI GenBank AF204145.1.

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core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
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Gene details
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General
Compounds
Genes
Saccharide
History
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0000774
Short description lipopolysaccharide biosynthetic gene cluster from Xanthomonas campestris pv. campestris
Status Minimal annotation: no
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: complete
Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • Saccharide (lipopolysaccharide)
Loci NCBI GenBank: AF204145.1
Compounds
  • lipopolysaccharide
Species Xanthomonas campestris pv. campestris [taxonomy]
References
Chemical products information
lipopolysaccharide [synonyms: lps, endotoxin]
(no structure information available)
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • AAK53494.1
  • wxcX
 134 - 772 (+) conserved protein involved in carbohydrate biosynthesis
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  • AAK53493.1
  • lpsJ
 1054 - 1692 (-) beta-subunit of putative 3-oxoacid CoA-transferase
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  • AAK53462.1
  • lpsI
 1692 - 2420 (-) alpha subunit of putative 3-oxoacid CoA-transferase
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  • AAA27610.1
  • xanA
 2555 - 3901 (+) phosphoglucomutase / phosphomannomutase
  • Precursor biosynthesis
Activity assay
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  • AAK53463.1
  • xanB
 3947 - 5350 (+) phosphomannose isomerase / GDP-mannose pyrophosphorylase
  • Precursor biosynthesis
Activity assay
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  • AAK53464.1
  • rmlD
 5472 - 6380 (-) dTDP-4-dehydrorhamnose reductase
  • Precursor biosynthesis
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  • AAK53465.1
  • rmlC
 6377 - 6934 (-) dTDP-4-dehydrorhamnose 3,5-epimerase
  • Precursor biosynthesis
Sequence-based prediction
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  • AAA16191.1
  • rmlA
 6931 - 7818 (-) glucose-1-phosphate thymidylyltransferase
  • Precursor biosynthesis
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  • AAK53466.1
  • rmlB
 7882 - 8937 (-) dTDP-glucose 4,6-dehydratase
  • Precursor biosynthesis
Sequence-based prediction
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  • AAK53467.1
  • etfS
 9166 - 9912 (+) putative electron-transferring flavoprotein beta subunit
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  • AAK53468.1
  • etfL
 9912 - 10856 (+) putative electron-transferring flavoprotein alpha subunit
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  • AAK53469.1
  • wxcH
 10916 - 11263 (+) WxcH
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  • AAK53470.1
  • wxcK
 11312 - 12415 (+) nucleotide sugar aminotransferase
  • Precursor biosynthesis
Sequence-based prediction
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  • AAK53471.1
  • wxcL
 12400 - 13371 (+) glycosyltransferase
  • Scaffold biosynthesis
Sequence-based prediction
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  • AAK53472.1
  • wxcM
 13368 - 14297 (+) bifunctional nucleotide hexosamine acetyltransferase / isomerase
  • Precursor biosynthesis
Sequence-based prediction
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  • AAK53473.1
  • wxcN
 14284 - 14724 (+) putative integral membrane protein WxcN
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  • AAK53474.1
  • wxcO
 14794 - 17046 (+) integral membrane protein
  • Other enzymatic
Sequence-based prediction
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  • AAK53475.1
  • rmd
 17188 - 18126 (-) GDP-4-dehydro-D-rhamnose reductase
  • Precursor biosynthesis
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  • AAK53476.1
  • gmd
 18110 - 19144 (-) GDP-mannose 4,6-dehydratase
  • Precursor biosynthesis
Sequence-based prediction
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  • AAK53477.1
  • wxcE
 19222 - 19857 (-) Unknown
  • Unknown
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  • AAK53478.1
  • wxcD
 19857 - 21602 (-) putative glycosyltransferase
  • Scaffold biosynthesis
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  • AAK53479.1
  • wxcC
 21623 - 22684 (-) glycosyltransferase
  • Scaffold biosynthesis
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  • AAK53480.1
  • wxcB
 22734 - 25022 (-) putative protein kinase
  • Unknown
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  • AAK53481.1
  • wzt
 25062 - 26348 (-) ATP-binding component of an ABC-type polysaccharide exporter
  • Transport
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  • AAK53482.1
  • wzm
 26345 - 27130 (-) permease protein of an ABC-type polysaccaharide exporter
  • Transport
Sequence-based prediction
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  • AAK53483.1
  • wxcA
 27214 - 28599 (-) glycosyltransferase
  • Scaffold biosynthesis
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  • AAK53484.1
  • uptH
 28596 - 29795 (-) cystathionine gamma-synthase
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  • AAK53485.1
  • uptG
 29889 - 31259 (-) cystathionine beta-lyase
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  • AAK53486.1
  • uptF
 31491 - 31985 (-) UptF
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  • AAK53487.1
  • uptE
 32051 - 32941 (-) putative outer membrane protein UptE precursor
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  • AAK53488.1
  • uptD
 32938 - 33321 (-) putative outer membrane protein UptD precursor
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  • AAK53489.1
  • uptC
 33420 - 34553 (+) type II secretion system protein-like protein
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  • AAK53490.1
  • uptB
 35073 - 35735 (-) putative maleylacetoacetate isomerase
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  • AAK53491.1
  • uptA
 35779 - 36768 (-) putative dioxygenase
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  • AAK53492.1
  • rhlE
 37148 - >37753 (+) putative ATP-dependent RNA helicase
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Saccharide-specific information
Subclass lipopolysaccharide
Glycosyltransferases
wxcL
Evidence:
  • Sequence-based prediction
wxcC
Evidence:
  • Sequence-based prediction
wxcA
Evidence:
  • Sequence-based prediction
Annotation changelog
MIBiG version Submitter Notes
1.0
  • Hidden contributor (ID: RXWHZKRGAGJ7NL3JTIYKSUAE, no GDPR consent given).
  • Submitted
2.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Migrated from v1.4
  • Updated compound(s) information (MIBiG Annotathon)
3.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Corrected gene identifiers
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