BGC0001700: niphimycin C biosynthetic gene cluster from Streptomyces sp. IMB7-145
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Location: 1 - 132,350 nt. (total: 132,350 nt).
This entry is originally from NCBI GenBank MF671979.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
Biosynthesis
History
NRPS/PKS domains
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0001700
Short description niphimycin C biosynthetic gene cluster from Streptomyces sp. IMB7-145
Status Quality: questionable
The quality level of this entry.

Status: active
The status of this entry.

Completeness: unknown
Whether the entry covers everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • PKS (Unknown)
Loci
MF671979.1
via
Compounds
  • niphimycin C
  • niphimycin D
  • niphimycin E
  • 17-O-methylniphimycin
  • niphimycin Iα
  • 19-O-malonylniphimycin
Species Streptomyces sp. IMB7-145 [taxonomy]
References
Chemical products information
niphimycin C [synonyms: 23-O-demalonyl-25-O-malonylniphimycin] Evidence: NMR [1]
Copy SMILES
C59H103N3O18
Chemical database entries
NPAtlas
niphimycin D [synonyms: 23-O-demalonyl-19,25-O-dimalonylniphimycin] Evidence: NMR [1]
Copy SMILES
C62H105N3O21
Chemical database entries
NPAtlas
niphimycin E [synonyms: 15-O-malonylniphimycin] Evidence: NMR [1]
Copy SMILES
C62H105N3O21
Chemical database entries
NPAtlas
17-O-methylniphimycin Evidence: NMR [1]
Copy SMILES
Chemical database entries
NPAtlas
niphimycin Iα Evidence: Chemical derivatisation [1]
Copy SMILES
Chemical database entries
NPAtlas
19-O-malonylniphimycin Evidence: NMR [1]
Copy SMILES
Chemical database entries
NPAtlas
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • AUO16393.1
  • npm1
1 - 4644 (-) hypothetical protein
    copy AA seq
    copy Nt seq
    • AUO16394.1
    • npm2
    4791 - 5399 (-) TetR family transcriptional regulator
      copy AA seq
      copy Nt seq
      • AUO16395.1
      • npm3
      5544 - 6758 (-) cytochrome P450
        copy AA seq
        copy Nt seq
        • AUO16421.1
        • npm4
        7123 - 8325 (+) cytochrome P450
          copy AA seq
          copy Nt seq
          • AUO16396.1
          • npm5
          8405 - 8611 (+) ferredoxin
            copy AA seq
            copy Nt seq
            • AUO16397.1
            • npmB
            8868 - 20711 (+) polyketide synthase
              copy AA seq
              copy Nt seq
              • AUO16398.1
              • npmC
              20806 - 31188 (+) polyketide synthase
                copy AA seq
                copy Nt seq
                • AUO16399.1
                • npmD
                31271 - 41392 (+) polyketide synthase
                  copy AA seq
                  copy Nt seq
                  • AUO16400.1
                  • npmE
                  41418 - 55661 (+) polyketide synthase
                    copy AA seq
                    copy Nt seq
                    • AUO16401.1
                    • npmF
                    55738 - 80562 (+) polyketide synthase
                      copy AA seq
                      copy Nt seq
                      • AUO16402.1
                      • npmG
                      80608 - 90225 (+) polyketide synthase
                        copy AA seq
                        copy Nt seq
                        • AUO16422.1
                        • npmH
                        90283 - 100647 (+) polyketide synthase
                          copy AA seq
                          copy Nt seq
                          • AUO16403.1
                          • npmI
                          100698 - 108452 (+) polyketide synthase
                            copy AA seq
                            copy Nt seq
                            • AUO16423.1
                            • npmA
                            108574 - 115494 (+) polyketide synthase
                              copy AA seq
                              copy Nt seq
                              • AUO16404.1
                              • npm6
                              115617 - 117053 (+) 4-guanidinobutanoate:CoA ligase
                                copy AA seq
                                copy Nt seq
                                • AUO16405.1
                                • npm7
                                117050 - 118084 (+) 4-guanidinobutyryl-CoA:ACP acyltransferase
                                  copy AA seq
                                  copy Nt seq
                                  • AUO16406.1
                                  • npm8
                                  118240 - 118848 (+) TetR family transcriptional regulator
                                    copy AA seq
                                    copy Nt seq
                                    • AUO16407.1
                                    • npm9
                                    118953 - 119837 (+) hydrolase
                                      copy AA seq
                                      copy Nt seq
                                      • AUO16408.1
                                      • npm10
                                      119920 - 120300 (+) HxlR family transcriptional regulator
                                        copy AA seq
                                        copy Nt seq
                                        • AUO16409.1
                                        • npm11
                                        120380 - 120820 (-) endoribonuclease L-PSP
                                          copy AA seq
                                          copy Nt seq
                                          • AUO16410.1
                                          • npm12
                                          120973 - 122403 (-) hypothetical protein
                                            copy AA seq
                                            copy Nt seq
                                            • AUO16411.1
                                            • npm13
                                            122536 - 123816 (-) membrane protein
                                              copy AA seq
                                              copy Nt seq
                                              • AUO16412.1
                                              • npm14
                                              124107 - 124694 (-) XRE family transcriptional regulator
                                                copy AA seq
                                                copy Nt seq
                                                • AUO16413.1
                                                • npm15
                                                124792 - 125091 (+) methyltransferase
                                                  copy AA seq
                                                  copy Nt seq
                                                  • AUO16414.1
                                                  • npm16
                                                  125126 - 125635 (+) mini-circle protein
                                                    copy AA seq
                                                    copy Nt seq
                                                    • AUO16415.1
                                                    • npm17
                                                    125642 - 126271 (-) AcrR family DNA-binding transcriptional regulator
                                                      copy AA seq
                                                      copy Nt seq
                                                      • AUO16416.1
                                                      • npm18
                                                      126515 - 128056 (+) CoA-transferase family III
                                                        copy AA seq
                                                        copy Nt seq
                                                        • AUO16417.1
                                                        • npm19
                                                        128114 - 128899 (-) GntR-family transcriptional regulator
                                                          copy AA seq
                                                          copy Nt seq
                                                          • AUO16418.1
                                                          • npm20
                                                          129038 - 129841 (+) 4-guanidinobutyramide hydrolase
                                                            copy AA seq
                                                            copy Nt seq
                                                            • AUO16419.1
                                                            • npm21
                                                            129835 - 131271 (+) amino acid transporter
                                                              copy AA seq
                                                              copy Nt seq
                                                              • AUO16420.1
                                                              • npm22
                                                              131314 - 132180 (-) AraC-family transcriptional regulator
                                                                copy AA seq
                                                                copy Nt seq
                                                                Biosynthesis information
                                                                Annotation changelog

                                                                Entry version: next

                                                                Date
                                                                Changes
                                                                Submitters
                                                                Reviewers
                                                                MIBiG v4 annotathon
                                                                • (ID: SJG3CBEHSM6A3I74YXLH6GLA)
                                                                • (ID: U45G63MLSP33JST2JZS23R4V)
                                                                • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

                                                                Entry version: 4

                                                                Date
                                                                Changes
                                                                Submitters
                                                                Reviewers
                                                                Update chemical activity to schema version 2.11
                                                                • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                                • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

                                                                Entry version: 3

                                                                Date
                                                                Changes
                                                                Submitters
                                                                Reviewers
                                                                Updated bioactivity data
                                                                • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                                • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

                                                                Entry version: 2

                                                                Date
                                                                Changes
                                                                Submitters
                                                                Reviewers
                                                                Migrated from v1.4
                                                                • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                                • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

                                                                Entry version: 1

                                                                Date
                                                                Changes
                                                                Submitters
                                                                Reviewers
                                                                Submitted
                                                                • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                                • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                                Detailed domain annotation
                                                                Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
                                                                A domain glossary is available here, and an explanation of the visualisation is available here.
                                                                Selected features only
                                                                Show module domains
                                                                Similar known gene clusters from MIBiG 4.0
                                                                Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
                                                                Click on reference genes to show details of similarities to genes within the current region.
                                                                Click on an accession to open that entry in the MiBIG database.