BGC0001870: putrebactin biosynthetic gene cluster from Xenorhabdus budapestensis
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 354,427 - 369,084 nt. (total: 14,658 nt).
This entry is originally from NCBI GenBank NIBS01000001.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
History
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0001870
Short description putrebactin biosynthetic gene cluster from Xenorhabdus budapestensis
Status Minimal annotation: no
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: complete
Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • Other
Loci NCBI GenBank: NIBS01000001.1
Compounds
  • putrebactin
  • avaroferrin
Species Xenorhabdus budapestensis [taxonomy]
References
Chemical products information
putrebactin
Copy SMILES
C16H28N4O6
Chemical database entries
PubCHEM
avaroferrin
Copy SMILES
C17H30N4O6
Chemical database entries
PubCHEM
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • Xbud_00361
  • PHM29812.1
 354427 - 356238 (+) desferrioxamine siderophore biosynthesis protein dfoC
copy AA seq
copy Nt seq
  • Xbud_00362
  • PHM29813.1
 356321 - 358534 (+) ferric alcaligin siderophore receptor
copy AA seq
copy Nt seq
  • Xbud_00363
  • PHM29814.1
 358602 - 359660 (+) putative lipoprotein
copy AA seq
copy Nt seq
  • Xbud_00364
  • PHM29815.1
 359647 - 360657 (+) hypothetical protein
copy AA seq
copy Nt seq
  • Xbud_00365
  • PHM29816.1
 360662 - 361714 (+) putative ferrichrome ABC transporter permease
copy AA seq
copy Nt seq
  • Xbud_00366
  • PHM29817.1
 361714 - 362529 (+) hypothetical protein
copy AA seq
copy Nt seq
  • Xbud_00367
  • PHM29818.1
 362531 - 363298 (+) putative iron transport-related membrane protein
copy AA seq
copy Nt seq
  • Xbud_00368
  • PHM29819.1
 363717 - 365333 (+) putative decarboxylase involved in desferrioxamine biosynthesis
copy AA seq
copy Nt seq
  • Xbud_00369
  • PHM29820.1
 365360 - 366679 (+) L-lysine 6-monooxygenase involved in desferrioxamine biosynthesis
copy AA seq
copy Nt seq
  • Xbud_00370
  • PHM29821.1
 366679 - 369084 (+) desferrioxamine siderophore biosynthesis protein dfoC
copy AA seq
copy Nt seq
Annotation changelog
MIBiG version Submitter Notes
2.0
  • Hidden contributor (ID: QOLAX6MMT6OJDW2ETPRKAERL, no GDPR consent given).
  • Submitted
3.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Fetch compound properties from PubChem
  • Cleaned up synonym list
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.