BGC0000105 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0000105 (Streptomyces nanchangensis)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	T1PKS	1	132,544	nanchangmycin	PKS	100%

BGC0000105 - Region 1 - T1PKS

Download region GenBank file

Download region SVG

Location: 1 - 132,544 nt. (total: 132,544 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

External annotation

Name		MIBiG
Version		4.0alpha

Type		Subregion
Location		1 - 132,545
Label		BGC0000105

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000105	1.00	Polyketide	nanchangmycin	Streptomyces nanchangensis
BGC0002559	0.43	Polyketide	J1-001-2	Streptomyces hygroscopicus
BGC0002047	0.35	Polyketide	brasiliquinone A, brasiliquinone B	Nocardia brasiliensis
BGC0001164	0.33	Polyketide	1-heptadecene	Cyanothece sp. PCC 7822
BGC0002266	0.32	Terpene, Polyketide	calidoustene A, calidoustene B, calidoustene C	Aspergillus calidoustus
BGC0001163	0.32	Polyketide	1-heptadecene	Moorea producens 3L
BGC0000068	0.32	Polyketide	geldanamycin	Streptomyces hygroscopicus
BGC0000278	0.32	Polyketide	urdamycin	Streptomyces fradiae
BGC0001283	0.32	Polyketide	arsono-polyketide	Streptomyces lividans 1326
BGC0002729	0.32	Polyketide	sordarial	Neurospora crassa OR74A

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000105	1.00	Polyketide	nanchangmycin	Streptomyces nanchangensis
BGC0002559	0.74	Polyketide	J1-001-2	Streptomyces hygroscopicus
BGC0002047	0.68	Polyketide	brasiliquinone A, brasiliquinone B	Nocardia brasiliensis
BGC0001164	0.66	Polyketide	1-heptadecene	Cyanothece sp. PCC 7822
BGC0002266	0.66	Terpene, Polyketide	calidoustene A, calidoustene B, calidoustene C	Aspergillus calidoustus
BGC0001163	0.65	Polyketide	1-heptadecene	Moorea producens 3L
BGC0000068	0.65	Polyketide	geldanamycin	Streptomyces hygroscopicus
BGC0000278	0.65	Polyketide	urdamycin	Streptomyces fradiae
BGC0001283	0.65	Polyketide	arsono-polyketide	Streptomyces lividans 1326
BGC0002729	0.65	Polyketide	sordarial	Neurospora crassa OR74A

Similar known gene clusters from MIBiG 4.0

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 120138:

Rough prediction of core scaffold based on assumed PKS linker matching; tailoring reactions not taken into account

Polymer prediction:: (mal - Me-ccmal) + (Me-redmal) + (ccmal - Me-redmal) + (Me-ccmal - redmal) + (Me-ccmal - redmal) + (ohmal) + (Me-ohmal) + (Me-redmal) + (Me-ohmal - Me-ccmal)
Non-colinear ordering:: nanA1 + nanA2 + nanA3 + nanA4 + nanA5 + nanA6 + nanA7 + nanA11 + nanA8

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

nanA1

PKS_AT (559..862): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 91.7%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 213.7
inactive: 103.1
Methoxymalonyl-CoA: 65.8
Methylmalonyl-CoA: 55.0
Propionyl-CoA: 30.3
Isobutyryl-CoA: 28.3
Ethylmalonyl-CoA: 22.3
Acetyl-CoA: 22.1
Benzoyl-CoA: 19.1
fatty_acid: 15.1
CHC-CoA: 12.6
3-Methylbutyryl-CoA: 6.1
2-Methylbutyryl-CoA: 3.1
trans-1,2-CPDA: 0.0

PKS_AT (1587..1887): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 91.7%; Ethylmalonyl-CoA: 83.3%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 203.4
Ethylmalonyl-CoA: 191.8
Methoxymalonyl-CoA: 159.4
2-Methylbutyryl-CoA: 150.1
trans-1,2-CPDA: 137.0
Propionyl-CoA: 116.4
Malonyl-CoA: 96.0
CHC-CoA: 93.0
Isobutyryl-CoA: 71.0
Benzoyl-CoA: 61.2
Acetyl-CoA: 47.9
fatty_acid: 46.5
3-Methylbutyryl-CoA: 32.4
inactive: 29.3

nanA2

PKS_AT (577..874): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 95.8%; Ethylmalonyl-CoA: 91.7%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 217.6
Ethylmalonyl-CoA: 211.6
Methoxymalonyl-CoA: 172.0
2-Methylbutyryl-CoA: 146.1
trans-1,2-CPDA: 130.5
Propionyl-CoA: 128.6
Malonyl-CoA: 107.5
CHC-CoA: 93.7
Isobutyryl-CoA: 64.4
Acetyl-CoA: 53.4
fatty_acid: 50.9
Benzoyl-CoA: 48.4
inactive: 32.8
3-Methylbutyryl-CoA: 30.5

nanA3

PKS_AT (576..873): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 79.2%; Methylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 216.9
inactive: 113.8
Methoxymalonyl-CoA: 63.5
Methylmalonyl-CoA: 59.6
Ethylmalonyl-CoA: 31.4
Propionyl-CoA: 30.5
Isobutyryl-CoA: 28.2
Acetyl-CoA: 23.1
Benzoyl-CoA: 21.2
CHC-CoA: 18.2
2-Methylbutyryl-CoA: 12.8
fatty_acid: 8.5
trans-1,2-CPDA: 7.8
3-Methylbutyryl-CoA: 0.0

PKS_AT (2407..2707): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 95.8%; Ethylmalonyl-CoA: 91.7%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 209.1
Ethylmalonyl-CoA: 194.4
Methoxymalonyl-CoA: 165.4
2-Methylbutyryl-CoA: 157.8
trans-1,2-CPDA: 132.0
Propionyl-CoA: 117.5
CHC-CoA: 98.8
Malonyl-CoA: 88.7
Isobutyryl-CoA: 70.4
Benzoyl-CoA: 50.5
Acetyl-CoA: 38.7
3-Methylbutyryl-CoA: 37.0
inactive: 27.5
fatty_acid: 26.5

nanA4

PKS_AT (598..898): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 91.7%; Ethylmalonyl-CoA: 87.5%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 214.5
Ethylmalonyl-CoA: 200.9
Methoxymalonyl-CoA: 168.1
2-Methylbutyryl-CoA: 149.3
trans-1,2-CPDA: 134.3
Propionyl-CoA: 107.5
CHC-CoA: 103.5
Malonyl-CoA: 102.4
Isobutyryl-CoA: 68.9
Benzoyl-CoA: 49.4
Acetyl-CoA: 45.2
fatty_acid: 29.5
inactive: 26.2
3-Methylbutyryl-CoA: 24.4

PKS_AT (2361..2655): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 79.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 171.9
inactive: 78.6
Methoxymalonyl-CoA: 62.7
Methylmalonyl-CoA: 59.2
Isobutyryl-CoA: 36.9
fatty_acid: 36.8
Propionyl-CoA: 24.3
Ethylmalonyl-CoA: 23.4
trans-1,2-CPDA: 21.1
Acetyl-CoA: 18.2
2-Methylbutyryl-CoA: 13.5
CHC-CoA: 12.3
Benzoyl-CoA: 10.7
3-Methylbutyryl-CoA: 0.0

nanA5

PKS_AT (585..885): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 79.2%; Malonyl-CoA: 79.2%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 197.4
Ethylmalonyl-CoA: 181.0
Methoxymalonyl-CoA: 157.5
2-Methylbutyryl-CoA: 128.3
trans-1,2-CPDA: 121.4
Malonyl-CoA: 102.8
Propionyl-CoA: 101.9
CHC-CoA: 81.9
Isobutyryl-CoA: 81.0
Benzoyl-CoA: 63.8
Acetyl-CoA: 54.0
3-Methylbutyryl-CoA: 35.2
inactive: 29.3
fatty_acid: 23.5

PKS_AT (2355..2657): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 79.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 178.2
inactive: 67.9
Methoxymalonyl-CoA: 57.6
Methylmalonyl-CoA: 52.2
Isobutyryl-CoA: 29.4
fatty_acid: 26.6
Acetyl-CoA: 26.5
Ethylmalonyl-CoA: 23.7
Propionyl-CoA: 23.5
trans-1,2-CPDA: 18.1
2-Methylbutyryl-CoA: 15.0
CHC-CoA: 14.2
Benzoyl-CoA: 9.1
3-Methylbutyryl-CoA: 0.0

nanA6

PKS_AT (565..867): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 79.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 179.1
inactive: 69.7
Methoxymalonyl-CoA: 59.6
Methylmalonyl-CoA: 53.1
Isobutyryl-CoA: 33.3
Acetyl-CoA: 27.4
fatty_acid: 26.4
Ethylmalonyl-CoA: 24.1
Propionyl-CoA: 23.3
trans-1,2-CPDA: 18.1
2-Methylbutyryl-CoA: 15.8
CHC-CoA: 14.2
Benzoyl-CoA: 9.1
3-Methylbutyryl-CoA: 0.0

nanA7

PKS_AT (568..869): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 95.8%; Ethylmalonyl-CoA: 91.7%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 201.8
Ethylmalonyl-CoA: 190.3
Methoxymalonyl-CoA: 163.9
2-Methylbutyryl-CoA: 143.6
trans-1,2-CPDA: 125.1
Propionyl-CoA: 109.0
CHC-CoA: 83.6
Malonyl-CoA: 83.4
Isobutyryl-CoA: 79.8
Benzoyl-CoA: 56.1
Acetyl-CoA: 43.3
fatty_acid: 37.3
3-Methylbutyryl-CoA: 32.7
inactive: 25.4

nanA11

PKS_AT (560..857): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Malonyl-CoA: 91.7%; Methoxymalonyl-CoA: 91.7%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 224.2
Ethylmalonyl-CoA: 211.8
Methoxymalonyl-CoA: 188.0
2-Methylbutyryl-CoA: 146.2
trans-1,2-CPDA: 134.1
CHC-CoA: 120.0
Malonyl-CoA: 113.6
Propionyl-CoA: 104.6
Isobutyryl-CoA: 91.2
Benzoyl-CoA: 78.7
3-Methylbutyryl-CoA: 53.3
Acetyl-CoA: 49.1
fatty_acid: 37.9
inactive: 30.5

nanA8

PKS_AT (581..875): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 91.7%; Ethylmalonyl-CoA: 87.5%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 210.4
Ethylmalonyl-CoA: 201.6
Methoxymalonyl-CoA: 169.6
2-Methylbutyryl-CoA: 161.6
trans-1,2-CPDA: 132.1
Propionyl-CoA: 124.5
Malonyl-CoA: 114.0
CHC-CoA: 106.8
Isobutyryl-CoA: 90.0
Acetyl-CoA: 66.7
Benzoyl-CoA: 64.1
3-Methylbutyryl-CoA: 44.4
inactive: 40.0
fatty_acid: 34.3

PKS_AT (2134..2428): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 91.7%; Ethylmalonyl-CoA: 87.5%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 210.4
Ethylmalonyl-CoA: 201.6
Methoxymalonyl-CoA: 169.6
2-Methylbutyryl-CoA: 161.6
trans-1,2-CPDA: 132.1
Propionyl-CoA: 124.5
Malonyl-CoA: 114.0
CHC-CoA: 106.8
Isobutyryl-CoA: 90.0
Acetyl-CoA: 66.7
Benzoyl-CoA: 64.1
3-Methylbutyryl-CoA: 44.4
inactive: 40.0
fatty_acid: 34.3