BGC0000116 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0000116 (Pseudonocardia autotrophica)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	T1PKS	1	125,717	nystatin-like Pseudonocardia polyene A1	PKS	100%

BGC0000116 - Region 1 - T1PKS

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Location: 1 - 125,717 nt. (total: 125,717 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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Gene overview

MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

External annotation

Name		MIBiG
Version		4.0alpha

Type		Subregion
Location		1 - 125,718
Label		BGC0000116

Detailed domain annotation

Selected features only

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000116	1.00	Polyketide	nystatin-like Pseudonocardia polyene	Pseudonocardia autotrophica
BGC0000016	0.48	Other	amphotericin B	Streptomyces nodosus
BGC0000041	0.46	Polyketide	oronofacic acid	Pseudomonas syringae
BGC0001709	0.41	Polyketide	nystatin	Streptomyces albulus
BGC0000115	0.36	Polyketide, Saccharide	nystatin A1	Streptomyces noursei ATCC 11455
BGC0000844	0.34	Other	clavulanic acid	Streptomyces clavuligerus
BGC0001647	0.33	Polyketide	lagunapyrone A, lagunapyrone B, lagunapyrone C	Streptomyces sp. MP131-18
BGC0002031	0.32	Alkaloid	kitasetaline	Kitasatospora setae KM-6054
BGC0002631	0.32	RiPP	myxarylin	Pyxidicoccus fallax
BGC0002211	0.32	Polyketide	HEx-pks1 polyketide	Paraphaeosphaeria sporulosa

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000116	1.00	Polyketide	nystatin-like Pseudonocardia polyene	Pseudonocardia autotrophica
BGC0000016	0.78	Other	amphotericin B	Streptomyces nodosus
BGC0000041	0.76	Polyketide	oronofacic acid	Pseudomonas syringae
BGC0001709	0.73	Polyketide	nystatin	Streptomyces albulus
BGC0000115	0.69	Polyketide, Saccharide	nystatin A1	Streptomyces noursei ATCC 11455
BGC0000844	0.67	Other	clavulanic acid	Streptomyces clavuligerus
BGC0001647	0.66	Polyketide	lagunapyrone A, lagunapyrone B, lagunapyrone C	Streptomyces sp. MP131-18
BGC0002031	0.65	Alkaloid	kitasetaline	Kitasatospora setae KM-6054
BGC0002631	0.65	RiPP	myxarylin	Pyxidicoccus fallax
BGC0002211	0.65	Polyketide	HEx-pks1 polyketide	Paraphaeosphaeria sporulosa

Similar known gene clusters from MIBiG 4.0

Module view

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 125717:

Rough prediction of core scaffold based on assumed PKS linker matching; tailoring reactions not taken into account

Polymer prediction:: (mal) + (Me-ohmal - Me-ohmal) + (ccmal - ccmal - redmal - ccmal - ccmal - ccmal) + (ccmal - ohmal - Me-ohmal - ohmal - ohmal - ohmal) + (redmal - ohmal - ccmal) + (ccmal)
Non-colinear ordering:: cppA + cppB + cppC + cppI + cppJ + cppK

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

cppI

PKS_AT (567..874): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 83.3%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 206.0
inactive: 96.6
Methoxymalonyl-CoA: 60.5
Methylmalonyl-CoA: 51.7
Benzoyl-CoA: 26.0
Isobutyryl-CoA: 21.3
Propionyl-CoA: 21.0
Acetyl-CoA: 18.3
trans-1,2-CPDA: 16.7
CHC-CoA: 14.9
2-Methylbutyryl-CoA: 14.0
fatty_acid: 12.6
3-Methylbutyryl-CoA: 0.0
Ethylmalonyl-CoA: -1.5

PKS_AT (2325..2621): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 79.2%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 227.7
inactive: 109.6
Methoxymalonyl-CoA: 64.4
Methylmalonyl-CoA: 55.0
Propionyl-CoA: 30.8
Ethylmalonyl-CoA: 29.2
Acetyl-CoA: 25.0
Isobutyryl-CoA: 22.6
Benzoyl-CoA: 20.3
CHC-CoA: 20.2
trans-1,2-CPDA: 16.8
2-Methylbutyryl-CoA: 16.8
fatty_acid: 14.1
3-Methylbutyryl-CoA: 0.0

PKS_AT (3872..4169): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 91.7%; Malonyl-CoA: 87.5%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 215.2
Ethylmalonyl-CoA: 206.6
Methoxymalonyl-CoA: 180.1
2-Methylbutyryl-CoA: 133.9
trans-1,2-CPDA: 132.5
Propionyl-CoA: 118.7
Malonyl-CoA: 109.2
CHC-CoA: 101.9
Isobutyryl-CoA: 93.8
Benzoyl-CoA: 84.3
Acetyl-CoA: 61.9
fatty_acid: 37.7
inactive: 37.0
3-Methylbutyryl-CoA: 36.4

PKS_AT (5413..5711): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 75.0%; Methylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 226.2
inactive: 111.9
Methoxymalonyl-CoA: 76.1
Methylmalonyl-CoA: 66.2
Isobutyryl-CoA: 34.4
Propionyl-CoA: 25.2
Ethylmalonyl-CoA: 20.4
Benzoyl-CoA: 19.9
fatty_acid: 14.5
Acetyl-CoA: 14.4
CHC-CoA: 13.3
trans-1,2-CPDA: 10.3
2-Methylbutyryl-CoA: 8.6
3-Methylbutyryl-CoA: 0.0

PKS_AT (6929..7228): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 79.2%; Methylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 206.0
inactive: 95.5
Methoxymalonyl-CoA: 66.5
Methylmalonyl-CoA: 61.4
Ethylmalonyl-CoA: 29.2
Isobutyryl-CoA: 23.9
Propionyl-CoA: 22.1
Benzoyl-CoA: 17.8
CHC-CoA: 16.2
Acetyl-CoA: 15.7
fatty_acid: 14.8
2-Methylbutyryl-CoA: 9.3
trans-1,2-CPDA: 8.0
3-Methylbutyryl-CoA: 5.3

PKS_AT (8437..8726): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 79.2%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 236.6
inactive: 112.1
Methoxymalonyl-CoA: 67.3
Methylmalonyl-CoA: 61.4
Propionyl-CoA: 36.5
Benzoyl-CoA: 29.1
Ethylmalonyl-CoA: 28.7
Isobutyryl-CoA: 27.2
Acetyl-CoA: 23.9
CHC-CoA: 19.2
fatty_acid: 15.2
trans-1,2-CPDA: 14.9
2-Methylbutyryl-CoA: 13.1
3-Methylbutyryl-CoA: 0.0

cppJ

PKS_AT (573..851): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 75.0%; Methylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 223.7
inactive: 103.6
Methoxymalonyl-CoA: 68.5
Methylmalonyl-CoA: 64.1
Propionyl-CoA: 28.1
Isobutyryl-CoA: 27.6
Ethylmalonyl-CoA: 27.3
Benzoyl-CoA: 24.5
fatty_acid: 18.0
Acetyl-CoA: 17.8
CHC-CoA: 17.1
trans-1,2-CPDA: 15.6
2-Methylbutyryl-CoA: 9.7
3-Methylbutyryl-CoA: 0.0

PKS_AT (2626..2918): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 75.0%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 193.8
inactive: 80.8
Methoxymalonyl-CoA: 50.8
Methylmalonyl-CoA: 44.3
Isobutyryl-CoA: 23.9
Propionyl-CoA: 21.5
Acetyl-CoA: 17.7
CHC-CoA: 17.2
Ethylmalonyl-CoA: 16.4
fatty_acid: 13.2
Benzoyl-CoA: 12.4
trans-1,2-CPDA: 8.1
2-Methylbutyryl-CoA: 0.6
3-Methylbutyryl-CoA: 0.0

PKS_AT (4149..4433): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 75.0%; Propionyl-CoA: 62.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 201.8
inactive: 85.6
Methoxymalonyl-CoA: 73.0
Methylmalonyl-CoA: 69.0
Isobutyryl-CoA: 40.7
fatty_acid: 35.4
Propionyl-CoA: 33.8
Ethylmalonyl-CoA: 30.3
CHC-CoA: 26.5
Acetyl-CoA: 17.4
trans-1,2-CPDA: 13.4
Benzoyl-CoA: 10.5
2-Methylbutyryl-CoA: 9.1
3-Methylbutyryl-CoA: 3.6

cppK

PKS_AT (553..841): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 83.3%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 202.3
inactive: 102.6
Methoxymalonyl-CoA: 62.3
Methylmalonyl-CoA: 44.0
Isobutyryl-CoA: 24.9
Propionyl-CoA: 21.4
Ethylmalonyl-CoA: 18.5
Acetyl-CoA: 15.1
Benzoyl-CoA: 12.9
CHC-CoA: 11.5
trans-1,2-CPDA: 5.4
fatty_acid: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

cppA

PKS_AT (523..818): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 79.2%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 227.1
inactive: 102.5
Methoxymalonyl-CoA: 65.9
Methylmalonyl-CoA: 62.4
Isobutyryl-CoA: 32.8
Ethylmalonyl-CoA: 32.7
Propionyl-CoA: 25.7
CHC-CoA: 19.2
Acetyl-CoA: 19.1
Benzoyl-CoA: 19.0
trans-1,2-CPDA: 13.0
fatty_acid: 12.5
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: -2.8

cppB

PKS_AT (564..861): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Malonyl-CoA: 91.7%; Methoxymalonyl-CoA: 91.7%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 199.1
Ethylmalonyl-CoA: 187.2
Methoxymalonyl-CoA: 166.1
trans-1,2-CPDA: 123.6
2-Methylbutyryl-CoA: 117.1
Malonyl-CoA: 98.8
Propionyl-CoA: 93.4
CHC-CoA: 72.5
Isobutyryl-CoA: 71.7
Benzoyl-CoA: 57.2
Acetyl-CoA: 35.9
fatty_acid: 31.6
3-Methylbutyryl-CoA: 30.1
inactive: 22.3

PKS_AT (2097..2401): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 91.7%; Malonyl-CoA: 87.5%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 213.8
Ethylmalonyl-CoA: 208.6
Methoxymalonyl-CoA: 180.6
trans-1,2-CPDA: 139.5
2-Methylbutyryl-CoA: 139.1
Propionyl-CoA: 116.3
CHC-CoA: 114.8
Malonyl-CoA: 107.4
Benzoyl-CoA: 78.7
Isobutyryl-CoA: 77.7
Acetyl-CoA: 53.4
fatty_acid: 51.4
inactive: 35.0
3-Methylbutyryl-CoA: 30.2

cppC

PKS_AT (544..838): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 75.0%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 216.5
inactive: 95.8
Methoxymalonyl-CoA: 60.7
Methylmalonyl-CoA: 52.7
Propionyl-CoA: 29.5
Ethylmalonyl-CoA: 27.9
Isobutyryl-CoA: 23.3
CHC-CoA: 18.3
Acetyl-CoA: 17.1
Benzoyl-CoA: 15.1
trans-1,2-CPDA: 10.6
2-Methylbutyryl-CoA: 8.0
fatty_acid: 7.2
3-Methylbutyryl-CoA: 0.0

PKS_AT (2308..2601): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 79.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 204.0
inactive: 87.2
Methoxymalonyl-CoA: 50.5
Methylmalonyl-CoA: 49.7
Propionyl-CoA: 29.0
Ethylmalonyl-CoA: 25.8
Isobutyryl-CoA: 22.0
Acetyl-CoA: 16.2
Benzoyl-CoA: 14.8
trans-1,2-CPDA: 10.5
2-Methylbutyryl-CoA: 9.3
fatty_acid: 6.8
3-Methylbutyryl-CoA: 0.0
CHC-CoA: -1.3

PKS_AT (4052..4342): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 79.2%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 227.6
inactive: 103.3
Methoxymalonyl-CoA: 60.8
Methylmalonyl-CoA: 55.2
Propionyl-CoA: 30.2
Ethylmalonyl-CoA: 23.8
Acetyl-CoA: 23.1
Isobutyryl-CoA: 19.8
Benzoyl-CoA: 17.7
CHC-CoA: 14.7
2-Methylbutyryl-CoA: 12.3
trans-1,2-CPDA: 9.1
fatty_acid: 0.0
3-Methylbutyryl-CoA: 0.0

PKS_AT (6112..6404): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 75.0%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 214.4
inactive: 106.2
Methoxymalonyl-CoA: 59.3
Methylmalonyl-CoA: 57.2
Propionyl-CoA: 39.8
Acetyl-CoA: 22.9
Isobutyryl-CoA: 20.5
Ethylmalonyl-CoA: 19.1
Benzoyl-CoA: 13.9
CHC-CoA: 12.7
fatty_acid: 9.6
trans-1,2-CPDA: 8.7
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: -3.2

PKS_AT (7847..8136): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 75.0%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 215.3
inactive: 94.3
Methoxymalonyl-CoA: 62.8
Methylmalonyl-CoA: 59.0
Propionyl-CoA: 31.8
Ethylmalonyl-CoA: 27.1
Isobutyryl-CoA: 24.9
Acetyl-CoA: 19.2
2-Methylbutyryl-CoA: 17.6
CHC-CoA: 16.3
Benzoyl-CoA: 12.3
fatty_acid: 11.9
trans-1,2-CPDA: 0.0
3-Methylbutyryl-CoA: 0.0

PKS_AT (9575..9873): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 79.2%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 232.5
inactive: 110.2
Methoxymalonyl-CoA: 57.9
Methylmalonyl-CoA: 55.2
Propionyl-CoA: 35.5
Ethylmalonyl-CoA: 29.5
Acetyl-CoA: 27.4
CHC-CoA: 24.4
Benzoyl-CoA: 23.7
trans-1,2-CPDA: 21.8
Isobutyryl-CoA: 16.6
2-Methylbutyryl-CoA: 15.5
fatty_acid: 10.4
3-Methylbutyryl-CoA: 0.0