BGC0000328 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0000328 (Pseudomonas savastanoi pv. glycinea (Pseudomonas syringae pv. glycinea))

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	NRPS-like	1	6,497	coronatine	NRPS:Type I	100%

BGC0000328 - Region 1 - NRPS-like

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Location: 1 - 6,497 nt. (total: 6,497 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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Gene details

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Gene overview

MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

External annotation

Name		MIBiG
Version		4.0alpha

Type		Subregion
Location		1 - 6,498
Label		BGC0000328

Detailed domain annotation

Selected features only

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000328	1.00	NRP	coronatine	Pseudomonas savastanoi pv. glycinea
BGC0001527	0.27	Other	basidioferrin	Gelatoporia subvermispora
BGC0002002	0.24	NRP	1,6-phenazinedimethanol, fontizine A	Serratia fonticola
BGC0002020	0.22	Saccharide, NRP	photolose	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001627	0.21	NRP	isonitrile lipopeptides	Mycobacterium tuberculosis H37Rv
BGC0001463	0.20	Other	2,3,4,5-tetrabromopyrrole	Pseudoalteromonas piscicida
BGC0001464	0.20	Other	tetrabromopyrrole	Pseudoalteromonas sp. PS5
BGC0002160	0.19	NRP	aspergillicin A, aspergillicin F, aspergillicin G	Aspergillus flavus
BGC0000131	0.19	Polyketide	pyrrolomycin	Streptomyces sp. UC 11065
BGC0002518	0.18	NRP	syringafactin A, syringafactin C	Pseudomonas sp. SZ57

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000328	1.00	NRP	coronatine	Pseudomonas savastanoi pv. glycinea
BGC0001527	0.61	Other	basidioferrin	Gelatoporia subvermispora
BGC0002002	0.57	NRP	1,6-phenazinedimethanol, fontizine A	Serratia fonticola
BGC0002020	0.55	Saccharide, NRP	photolose	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001627	0.53	NRP	isonitrile lipopeptides	Mycobacterium tuberculosis H37Rv
BGC0001463	0.53	Other	2,3,4,5-tetrabromopyrrole	Pseudoalteromonas piscicida
BGC0001464	0.52	Other	tetrabromopyrrole	Pseudoalteromonas sp. PS5
BGC0002160	0.51	NRP	aspergillicin A, aspergillicin F, aspergillicin G	Aspergillus flavus
BGC0000131	0.51	Polyketide	pyrrolomycin	Streptomyces sp. UC 11065
BGC0002518	0.50	NRP	syringafactin A, syringafactin C	Pseudomonas sp. SZ57

Similar known gene clusters from MIBiG 4.0

Module view

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 6497:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (aIle)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

AAQ93484.1

Search NORINE for peptide: strict or relaxed

AMP-binding (14..409): aIle

nrpys: aIle

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAFLYGGVFK
Nearest Stachelhaus code(s):: aIle DAFLYGGVFK (100% 8Å match)
Stachelhaus code match:: 100% (strong)