BGC0000329 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0000329 (Pseudomonas corrugata)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	NRPS,hserlactone	1	21,538	corpeptin A/corpeptin B	NRPS:Type I	100%

BGC0000329 - Region 1 - NRPS,hserlactone

Download region GenBank file

Download region SVG

Location: 1 - 21,538 nt. (total: 21,538 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))
hserlactone: Autoind_synth

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

External annotation

Name		MIBiG
Version		4.0alpha

Type		Subregion
Location		1 - 21,539
Label		BGC0000329

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000329	1.36	NRP	corpeptin A, corpeptin B	Pseudomonas corrugata
BGC0000855	0.50	Other	ectoine	Methylomicrobium kenyense
BGC0000859	0.50	Other	ectoine	Methylomicrobium alcaliphilum
BGC0000858	0.50	Other	ectoine	Methylobacter marinus
BGC0000857	0.50	Other	ectoine	Methylophaga alcalica
BGC0000856	0.49	Other	ectoine	Methylophaga thalassica
BGC0000852	0.49	Other	ectoine	Sporosarcina pasteurii
BGC0000860	0.48	Other	ectoine	Methylarcula marina
BGC0000854	0.36	Other	ectoine	Methylomicrobium alcaliphilum 20Z
BGC0002470	0.36	Other	synechobactin C9, synechobactin C11, synechobactin 13, synechobactin 14, synechobactin 16, synechobactin A, synechobactin B, synechobactin C	Synechococcus sp. PCC 7002

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000329	1.00	NRP	corpeptin A, corpeptin B	Pseudomonas corrugata
BGC0001132	0.64	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0002286	0.63	NRP	ririwpeptide A, ririwpeptide B, ririwpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001128	0.62	NRP	gamexpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0002359	0.61	NRP	dudomycin A	Streptomyces albus subsp. chlorinus
BGC0001833	0.61	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001135	0.60	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0000979	0.60	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E9
BGC0000980	0.60	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 22D11
BGC0001758	0.60	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454

Similar known gene clusters from MIBiG 4.0

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 21538:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Ser - Ile)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

crpC

Search NORINE for peptide: strict or relaxed

AMP-binding (1..320): Ser

nrpys: Ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
Small clusters prediction:: ser (Ser)
Single AA prediction:: ser (Ser)

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHMSLVDK
Nearest Stachelhaus code(s):: Ser DVWHMSLVDK (100% 8Å match)
Stachelhaus code match:: 100% (strong)

AMP-binding (1001..1396): Ile

nrpys: Ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: ile (Ile)

Stachelhaus prediction details:

Stachelhaus sequence:: DAMFLGCTFK
Nearest Stachelhaus code(s):: Ile DAMFLGCTFK (100% 8Å match); Leu or Ile DAMFLGCTFK (91% 8Å match)
Stachelhaus code match:: 100% (strong)