dptE: NH2
CAL_domain (44..471): NH2
minowa: NH2
- Prediction, score:
-
- NH2: 121.8
- fatty_acid: 22.9
- Acetyl-CoA: 11.7
- shikimic_acid: 0.0
- AHBA: 0.0
dptA: Trp - Asn - Asp - Thr - Gly
AMP-binding (463..848): Trp
nrpys: Trp
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aromatic (Phe, Tyr, diOH-Bz, Ph-Gly, bOH-Tyr)
- Large clusters prediction:
- Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
- Small clusters prediction:
- Polar aromatic ring (Tyr, bOH-Tyr)
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVSSIGAVEK
- Nearest Stachelhaus code(s):
- Trp DVSSIGAVEK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1503..1907): Asn
nrpys: Asn
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
- Small clusters prediction:
- asp,asn (Asp, Asn)
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLTKLGDVNK
- Nearest Stachelhaus code(s):
- Asn DLTKLGDVNK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3082..3484): Asp
nrpys: Asp
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
- Small clusters prediction:
- asp,asn (Asp, Asn)
- Single AA prediction:
- asn (Asn)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLTKLGAVNK
- Nearest Stachelhaus code(s):
- Asp DLTKLGAVNK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4148..4554): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWSVGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWSVGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (5222..5616): Gly
nrpys: Gly
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- gly (Gly)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DILQLGVIWK
- Nearest Stachelhaus code(s):
- Gly DILQLGVIWK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
dptBC: Orn - Asp - Ala - Asp - Gly - Ser
AMP-binding (461..867): Orn
nrpys: Orn
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- Long positively charged side chain (Orn, Lys, Arg)
- Small clusters prediction:
- Orn and hydroxy-Orn specific (Orn, OH-Orn)
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DTEDMGYVDK
- Nearest Stachelhaus code(s):
- Orn DTEDMGYVDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1532..1937): Asp
nrpys: Asp
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
- Small clusters prediction:
- asp,asn (Asp, Asn)
- Single AA prediction:
- asn (Asn)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLTKLGAVNK
- Nearest Stachelhaus code(s):
- Asp DLTKLGAVNK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2596..2987): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVVSAAFVYK
- Nearest Stachelhaus code(s):
- Ala DVVSAAFVYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4123..4528): Asp
nrpys: Asp
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
- Small clusters prediction:
- asp,asn (Asp, Asn)
- Single AA prediction:
- asn (Asn)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLTKLGAVNK
- Nearest Stachelhaus code(s):
- Asp DLTKLGAVNK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (5195..5590): Gly
nrpys: Gly
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- gly (Gly)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DILQVGMIWK
- Nearest Stachelhaus code(s):
- Gly DILQVGMIWK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (6250..6648): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHISLVDK
- Nearest Stachelhaus code(s):
- Ser DVWHISLVDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
dptD: 3Me-Glu - X
AMP-binding (465..863): 3Me-Glu
nrpys: 3Me-Glu
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- N/A
- Small clusters prediction:
- asp,asn (Asp, Asn)
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLGKTGVINK
- Nearest Stachelhaus code(s):
- 3Me-Glu DLGKTGVINK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1536..1935): X
nrpys: Kyn
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aromatic (Phe, Tyr, diOH-Bz, Ph-Gly, bOH-Tyr)
- Large clusters prediction:
- Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
- Small clusters prediction:
- Unpolar aromatic ring (Phe, Trp)
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAWTTTGVGK
- Nearest Stachelhaus code(s):
- Kyn DAWTTTGVGK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
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