Psyr_2608: Ser - Ser - Dab - Dab - Arg - Phe - Thr - Asp
AMP-binding (519..925): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHLSLIDK
- Nearest Stachelhaus code(s):
- Ser DVWHLSLIDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1609..2015): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHLSLIDK
- Nearest Stachelhaus code(s):
- Ser DVWHLSLIDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2693..3103): Dab
nrpys: Dab
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLEHNTTVSK
- Nearest Stachelhaus code(s):
- Dab DLEHNTTVSK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3780..4190): Dab
nrpys: Dab
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLEHNTTVSK
- Nearest Stachelhaus code(s):
- Dab DLEHNTTVSK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4848..5252): Arg
nrpys: Arg
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- Long positively charged side chain (Orn, Lys, Arg)
- Small clusters prediction:
- arg (Arg)
- Single AA prediction:
- arg (Arg)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVADVGAIDK
- Nearest Stachelhaus code(s):
- Arg DVADVGAIDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (5915..6312): Phe
nrpys: Phe
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aromatic (Phe, Tyr, diOH-Bz, Ph-Gly, bOH-Tyr)
- Large clusters prediction:
- Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
- Small clusters prediction:
- Unpolar aromatic ring (Phe, Trp)
- Single AA prediction:
- phe (Phe)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAPIMGGTCK
- Nearest Stachelhaus code(s):
- Phe DAPIMGGTCK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (6973..7385): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNVGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNVGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (8071..8473): Asp
nrpys: Asp
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
- Small clusters prediction:
- asp,asn (Asp, Asn)
- Single AA prediction:
- asp (Asp)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DMKDLGMVDK
- Nearest Stachelhaus code(s):
- Asp DMKDLGMVDK (100% 8Å match)
- OH-Asp or Asp DMKDLGMVDK (97% 8Å match)
- Stachelhaus code match:
- 100% (strong)
Psyr_2611: Thr
AMP-binding (26..426): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWSVGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWSVGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
Psyr_2614: Thr - Pro - Val - Leu - Ala
AMP-binding (493..897): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1582..1998): Pro
nrpys: Pro
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Cyclic aliphatic chain (polar NH2 group) (Pro, Hpr)
- Small clusters prediction:
- pro (Pro)
- Single AA prediction:
- pro (Pro)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVQYIAHVVK
- Nearest Stachelhaus code(s):
- Pro DVQYIAHVVK (97% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2679..3073): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DALWIGGTFK
- Nearest Stachelhaus code(s):
- Val DALWIGGTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3729..4117): Leu
nrpys: Leu
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- leu (Leu)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAWFLGNVVK
- Nearest Stachelhaus code(s):
- Leu DAWFLGNVVK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4800..5190): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (97% 8Å match)
- Stachelhaus code match:
- 100% (strong)
Psyr_2615: Ala - Ala - Val - Thr - Ala
AMP-binding (568..958): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1647..2037): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2720..3113): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DALWIGGTFK
- Nearest Stachelhaus code(s):
- Val DALWIGGTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3795..4199): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4881..5272): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
Psyr_2616: Val - Ala - Ala - Thr - Thr - Ser - Ala - Thr - Ala - Dab - Dab - Tyr
AMP-binding (555..947): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DALWIGGTFK
- Nearest Stachelhaus code(s):
- Val DALWIGGTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1629..2019): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2702..3096): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3780..4185): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4867..5272): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (5955..6361): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHLSLIDK
- Nearest Stachelhaus code(s):
- Ser DVWHLSLIDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (7046..7436): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (8121..8524): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (9206..9596): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (10255..10665): Dab
nrpys: Dab
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLEHNTTVSK
- Nearest Stachelhaus code(s):
- Dab DLEHNTTVSK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (11323..11733): Dab
nrpys: Dab
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLEHNTTVSK
- Nearest Stachelhaus code(s):
- Dab DLEHNTTVSK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (12391..12786): Tyr
nrpys: Tyr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aromatic (Phe, Tyr, diOH-Bz, Ph-Gly, bOH-Tyr)
- Large clusters prediction:
- Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
- Small clusters prediction:
- Polar aromatic ring (Tyr, bOH-Tyr)
- Single AA prediction:
- tyr (Tyr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAPFEGGTCK
- Nearest Stachelhaus code(s):
- Tyr DAPFEGGTCK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
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