sypA: Thr - Pro - Val - Val - Ala
AMP-binding (466..870): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1555..1971): Pro
nrpys: Pro
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Cyclic aliphatic chain (polar NH2 group) (Pro, Hpr)
- Small clusters prediction:
- pro (Pro)
- Single AA prediction:
- pro (Pro)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVQYIAHVVK
- Nearest Stachelhaus code(s):
- Pro DVQYIAHVVK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2652..3045): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DALWIGGTFK
- Nearest Stachelhaus code(s):
- Val DALWIGGTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3728..4121): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DALWIGGTFK
- Nearest Stachelhaus code(s):
- Val DALWIGGTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4803..5197): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
sypB: Ala - Val - Val - Thr - Ala
AMP-binding (554..944): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1631..2025): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DALWIGGTFK
- Nearest Stachelhaus code(s):
- Val DALWIGGTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2708..3101): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DALWIGGTFK
- Nearest Stachelhaus code(s):
- Val DALWIGGTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3783..4187): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4869..5260): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
sypC: Val - Ala - Ala - Thr - Thr - Ser - Ala - Thr - Ala - Dab - Dab - Tyr
AMP-binding (555..947): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DALWIGGTFK
- Nearest Stachelhaus code(s):
- Val DALWIGGTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1629..2019): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2702..3096): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3780..4185): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4867..5272): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (5955..6361): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHLSLIDK
- Nearest Stachelhaus code(s):
- Ser DVWHLSLIDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (7046..7436): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (8120..8523): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (9205..9595): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (10254..10664): Dab
nrpys: Dab
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLEHNTTVSK
- Nearest Stachelhaus code(s):
- Dab DLEHNTTVSK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (11322..11732): Dab
nrpys: Dab
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLEHNTTVSK
- Nearest Stachelhaus code(s):
- Dab DLEHNTTVSK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (12390..12785): Tyr
nrpys: Tyr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aromatic (Phe, Tyr, diOH-Bz, Ph-Gly, bOH-Tyr)
- Large clusters prediction:
- Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
- Small clusters prediction:
- Polar aromatic ring (Tyr, bOH-Tyr)
- Single AA prediction:
- tyr (Tyr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAPFEGGTCK
- Nearest Stachelhaus code(s):
- Tyr DAPFEGGTCK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
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