AEP18655.1: Glu - Asn - Trp - Orn - Val
AMP-binding (465..867): Glu
nrpys: Glu
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- N/A
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHVGSIGK
- Nearest Stachelhaus code(s):
- Glu DVWHVGSIGK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1531..1944): Asn
nrpys: Asn
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
- Small clusters prediction:
- asp,asn (Asp, Asn)
- Single AA prediction:
- asn (Asn)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DGTKLGEVGK
- Nearest Stachelhaus code(s):
- Asn DGTKLGEVGK (100% 8Å match)
- OH-Asn or Asn DGTKLGEVGK (91% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3062..3469): Trp
nrpys: Trp
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAGLVGEVWK
- Nearest Stachelhaus code(s):
- Trp DAGLVGEVWK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4602..5010): Orn
nrpys: Orn
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- N/A
- Small clusters prediction:
- Orn and hydroxy-Orn specific (Orn, OH-Orn)
- Single AA prediction:
- orn (Orn)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DTEDMGLVDK
- Nearest Stachelhaus code(s):
- Orn DTEDMGLVDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (6134..6536): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAYWWGGTFK
- Nearest Stachelhaus code(s):
- Val DAYWWGGTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AEP18656.1: Ser - X - Ser - Gly - Phe - Leu - Orn
AMP-binding (459..862): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHVSLIDK
- Nearest Stachelhaus code(s):
- Ser DVWHVSLIDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1514..1918): X
nrpys: OH-Asn, Asn
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
- Small clusters prediction:
- asp,asn (Asp, Asn)
- Single AA prediction:
- asn (Asn)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DGTKLGEVGK
- Nearest Stachelhaus code(s):
- OH-Asn or Asn DGTKLGEVGK (100% 8Å match)
- Asn DGTKLGEVGK (91% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3063..3466): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHVSLIDK
- Nearest Stachelhaus code(s):
- Ser DVWHVSLIDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4126..4524): Gly
nrpys: Gly
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- gly (Gly)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DILQLGVVWK
- Nearest Stachelhaus code(s):
- Gly DILQLGVVWK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (5190..5583): Phe
nrpys: Phe
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aromatic (Phe, Tyr, diOH-Bz, Ph-Gly, bOH-Tyr)
- Large clusters prediction:
- Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
- Small clusters prediction:
- Unpolar aromatic ring (Phe, Trp)
- Single AA prediction:
- phe (Phe)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAWTIAAVCK
- Nearest Stachelhaus code(s):
- Phe DAWTIAAVCK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (7136..7542): Leu
nrpys: Leu
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aromatic (Phe, Tyr, diOH-Bz, Ph-Gly, bOH-Tyr)
- Large clusters prediction:
- Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAMLIGAICK
- Nearest Stachelhaus code(s):
- Leu DAMLIGAICK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (8199..8619): Orn
nrpys: Orn
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- N/A
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DTEDMGYVDK
- Nearest Stachelhaus code(s):
- Orn DTEDMGYVDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
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