LOCUS       BGC0000490              3799 bp    DNA     linear   BCT 20-SEP-2013
DEFINITION  Lactococcus garvieae DCC43 contig_1, whole genome shotgun sequence.
ACCESSION   BGC0000490
VERSION     BGC0000490
KEYWORDS    .
SOURCE      Lactococcus garvieae DCC43
  ORGANISM  Lactococcus garvieae DCC43
            Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae;
            Lactococcus.
COMMENT     Bacteria and source DNA available from Laboratory of Microbial Gene
            Technology (LMG), Norwegian University of Life Sciences, Norway
            Annotation was updated on contig AMQS01000001 in September 2013.
            ##antiSMASH-Data-START##
            Version      :: 6.2.0-924c3663(changed)
            Run date     :: 2022-11-07 19:40:15
            ##antiSMASH-Data-END##
FEATURES             Location/Qualifiers
     CDS             complement(1..483)
                     /codon_start=1
                     /gene="garE"
                     /locus_tag="C426_00001"
                     /note="involved in immunity and circularization"
                     /product="Membrane protein"
                     /protein_id="ERL47808.1"
                     /transl_table=11
                     /translation="MKKKQLWFLATSLVFLIISFIITSAMYKSGIMVKTIPNSLEEYIL
                     PILILSVVIMYLFSLLASFCYTVIINLVSKKDKLSYSVVTSMYLISAIIVQLLTISYKL
                     ITNSFSSHQLVINIVGGLITNIIFVVLISTQLKLKQYQYILIFIIIAIANIIIQLI"
     protocluster    1..3799
                     /aStool="rule-based-clusters"
                     /category="RiPP"
                     /contig_edge="True"
                     /core_location="[2112:2304]"
                     /cutoff="20000"
                     /detection_rule="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or
                     TIGR03604))"
                     /neighbourhood="5000"
                     /product="RiPP-like"
                     /protocluster_number="1"
                     /tool="antismash"
     proto_core      2113..2304
                     /aStool="rule-based-clusters"
                     /tool="antismash"
                     /cutoff="20000"
                     /detection_rule="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or
                     TIGR03604))"
                     /neighbourhood="5000"
                     /product="RiPP-like"
                     /protocluster_number="1"
     cand_cluster    1..3799
                     /candidate_cluster_number="1"
                     /contig_edge="True"
                     /detection_rules="(strepbact or Antimicrobial14 or
                     Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or
                     Bacteriocin_IIi or Lactococcin or Antimicrobial17 or
                     Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin
                     or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or
                     TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or
                     TIGR03604))"
                     /kind="single"
                     /product="RiPP-like"
                     /protoclusters="1"
                     /tool="antismash"
     subregion       1..3799
                     /aStool="externally annotated by: MIBiG"
                     /contig_edge="True"
                     /label="BGC0000490"
                     /subregion_number="1"
                     /tool="antismash"
     region          1..3799
                     /candidate_cluster_numbers="1"
                     /contig_edge="True"
                     /product="RiPP-like"
                     /region_number="1"
                     /rules="(strepbact or Antimicrobial14 or Bacteriocin_IId or
                     BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or
                     Lactococcin or Antimicrobial17 or Lactococcin_972 or
                     Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or
                     TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or
                     TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))"
                     /subregion_numbers="1"
                     /tool="antismash"
     gene            complement(1..483)
                     /gene="garE"
                     /locus_tag="C426_00001"
     gene            complement(486..989)
                     /gene="garD"
                     /locus_tag="C426_00002"
     CDS             complement(486..989)
                     /codon_start=1
                     /gene="garD"
                     /locus_tag="C426_00002"
                     /note="involved in immunity and circularization"
                     /product="Membrane protein with DUF95"
                     /protein_id="ERL47809.1"
                     /transl_table=11
                     /translation="MSYKTSYIFAISLFVLTMMFGMIATIFLFKDMNLDVLYSKNLGWS
                     SIFQKIFIKNISLIIFIILLGIVPYVPTILLASFNFFVFGISLMTSVKGGGDWFVQYLH
                     SIVEIPAILIGISISFRISQRIYDKIMHKENVLKIKKLEILLIPLLLLIGATIESFYLS
                     NGGV"
     gene            complement(979..1620)
                     /gene="garC"
                     /locus_tag="C426_0087"
     CDS             complement(979..1620)
                     /codon_start=1
                     /gene="garC"
                     /gene_functions="transport (smcogs) SMCOG1000:ABC
                     transporter ATP-binding protein (Score: 69.6; E-value:
                     5.7e-21)"
                     /gene_kind="transport"
                     /locus_tag="C426_0087"
                     /note="involved in immunity and circularization"
                     /product="putative ABC transporter ATP-binding protein"
                     /protein_id="EKF52512.1"
                     /transl_table=11
                     /translation="MRDNKVCVIAKNIKQGDEIIIPSLNIKFSKQKINNIVGKNGIGKS
                     TLLSAMAGELNCEYLKIYDNQNEINPYKNYDIIKISSDFFGYEYLTSIEFVEYILRIYK
                     EEVDKGITCGKYLMDILNMKKYENTLVKNLSQGTKQKLAFISAAVTNCGILLFDESFEH
                     IDQESIHVIKEILDREMVKRCVISVSHTNILQGLSTEEINLEEKVNHYEL"
     gene            complement(1621..1788)
                     /gene="garB"
                     /locus_tag="C426_00003"
     CDS             complement(1621..1788)
                     /codon_start=1
                     /gene="garB"
                     /locus_tag="C426_00003"
                     /note="involved in immunity and circularization"
                     /product="Putative immunity protein"
                     /protein_id="ERL47810.1"
                     /transl_table=11
                     /translation="MNYNLLSITIAFIFSIHLILKNVNKKNKNWLIIIFLVSCMLIFLF
                     GIVGILLRWF"
     gene            2113..2304
                     /gene="garA"
                     /locus_tag="C426_0088"
     CDS             2113..2304
                     /codon_start=1
                     /gene="garA"
                     /gene_functions="biosynthetic (rule-based-clusters)
                     RiPP-like: TIGR03651"
                     /gene_kind="biosynthetic"
                     /locus_tag="C426_0088"
                     /product="product Garvicin ML precursor"
                     /protein_id="EKF52513.1"
                     /sec_met_domain="TIGR03651 (E-value: 4.8e-09, bitscore:
                     25.2, seeds: 9, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MFDLVATGMAAGVAKTIVNAVSAGMDIATALSLFSGAFTAAGGIM
                     ALIKKYAQKKLWKQLIAA"
     gene            2366..3799
                     /gene="garX"
                     /locus_tag="C426_0089"
     CDS             2366..3799
                     /codon_start=1
                     /gene="garX"
                     /locus_tag="C426_0089"
                     /note="involved in immunity and circularization"
                     /product="membrane protein"
                     /protein_id="EKF52514.1"
                     /transl_table=11
                     /translation="MIKILFLRDLRFRADYLRNILKETFSYIPSKWIKILCSWLAFLQL
                     TITFFGIFFLAIFSIYSKKIYIEMIMFINCYMDLLLINNRSLLYRENSRKTFIFKLSLN
                     KIIFHIMKKTDLLLWFSIFSFLISTSYLFFTDISPVHILSAIVIIISSLNLLKNNNSKL
                     YFTLASILAGITTIISLKDSLIEIIHYILESKTSLISSILSNAPLYDSYKIVITVLFIY
                     SILFESINTLFFNKCLTPIKIKERYSFILFPHFFNLNMRGIKNYIFDNLYSFLITQIVS
                     FLVYISIVYVSNIFLLPELLFILIQIIFFMHTSELENTYKRFLMLAANKNEKNIILSSF
                     STFILSFSIRFYFLLFLNIPYIFINYLYIDNKVYLILSLLPSILIQLTQENTLLDDYKS
                     IAIDKNINLKIPYNKFLYLSTLVFLGMIQFYIINEQANFSRTAFMIVYLLTVYSIIIFM
                     MIKLLLKNKKIHFNEIKVK"
ORIGIN
        1 ttaaattaac tgaataataa tattagctat ggcaataata ataaatataa gtatgtattg
       61 atattgtttt agcttcaatt gcgtagatat caagacaaca aatattatat ttgttatcaa
      121 tcctccaact atattaatta ctaattgatg actactaaaa gaattagtga tcaatttata
      181 tgatattgtc agtagttgta caataattgc tgaaatcaaa tacatggatg tgacaacact
      241 gtaagataat ttatcttttt ttgatactaa atttataata acagtgtaac aaaaagaagc
      301 taataaagaa aagagataca ttattaccac tgataaaata agaattggta agatatattc
      361 ctctaaacta ttagggattg ttttcaccat aattcctgat ttatacatcg cacttgtgat
      421 aataaaacta attattaaaa atacaaggga tgttgctaaa aaccaaagtt gctttttttt
      481 cattactata ctcctccgtt tgataaataa aatgattcaa tggttgcacc tataagtaat
      541 agaagcggta ttaataaaat ttctagtttt tttattttta gaacattttc tttatgcatt
      601 attttgtcgt aaattctttg agagattcta aaagatattg aaataccaat taaaattgca
      661 ggtatttcca caatagaatg caaatattga acaaaccaat ctccccctcc ttttacagat
      721 gtcataagac ttataccaaa aacaaaaaaa ttaaaagatg ccaataatat tgttggaaca
      781 taaggtacta ttcctaaaag aattataaat attattaaag atatattttt aataaatatt
      841 ttctgaaaaa tagaactcca tcctaagttc tttgaatata aaacatctaa gttcatatct
      901 ttaaaaagga aaatagtagc tatcatgcca aacatcatcg ttaagacaaa taaggatata
      961 gcaaaaatat aacttgtttt ataactcata atgatttact ttctcttcca aatttatttc
     1021 ttccgtagat aatccctgta atatattggt gtgtgaaaca cttataacac atcgttttac
     1081 catttctcta tctaaaattt cttttataac atgtatgctt tcttgatcaa tatgttcaaa
     1141 tgattcatca aataaaagaa ttccacaatt agttacagca gcagatataa atgctaattt
     1201 ttgttttgtt ccttgagata aattttttac tagagtattt tcatattttt tcatgtttaa
     1261 aatatccatc aaatatttac cacatgtaat gcccttatct acttcttctt tataaattct
     1321 taatatatac tctacaaatt ctatacttgt taagtactca tacccaaaaa aatcagaaga
     1381 aatttttata atatcgtaat ttttataagg atttatttca ttttggttgt catatatttt
     1441 taaatattca caatttaatt caccagccat tgctgataga agagtactct taccaatccc
     1501 gtttttacct acaatattat taattttttg tttactaaac tttatattta aagatggaat
     1561 aataatttca tcaccttgct ttatattttt tgcaataaca caaactttat tatctctcaa
     1621 ttaaaaccac ctcaagagaa ttccaacaat cccaaaaagg aaaattaaca tacaagacac
     1681 caaaaaaata attattagcc aatttttgtt ttttttattt acatttttta gtattagatg
     1741 tatagaaaat ataaatgcta tagtaattga taaaagatta taattcatga aaactccctt
     1801 tttttataca ataattataa tatttctaga aatttaatat tatatccata ttctattgta
     1861 attttttaaa aaaaaccagt atttactcgt tttattacaa aatttatttt catatcaagt
     1921 tttgtagtaa aaaatttata tttttttgaa tactaaaatt ctaaatttaa ataataaaac
     1981 atgttgaaaa ctctaaattt atatatatca tctaaaaaat tcattcaaat ttagttatct
     2041 cttgttttat tttaattttt gttttataat atgtgtgtcg aataaaataa agtaatttat
     2101 aggaggatta ttatgtttga tttagtcgcg actggaatgg ctgcaggtgt agcaaaaact
     2161 attgttaatg ccgttagtgc tggtatggat attgccactg ctttatcatt gttctcagga
     2221 gcttttactg cagctggggg aattatggca ctcattaaaa aatatgctca aaagaaatta
     2281 tggaaacagc ttattgctgc ataacttctg gaaaaatcaa taaaaaataa aagtaactta
     2341 tataagttgc ttttttggga taatcatgat aaaaatttta tttttacgag atctacgttt
     2401 tagagctgat tatttgagaa atattcttaa agaaactttt tcttatattc caagcaaatg
     2461 gatcaaaata ttatgtagtt ggttagcatt tttacaacta actataactt tttttggaat
     2521 attttttcta gctatttttt caatttacag taaaaagatt tatatagaaa tgattatgtt
     2581 tattaattgt tatatggatt tattattaat aaataatcga tcattgctgt atagagaaaa
     2641 tagcagaaaa acttttattt ttaagctttc actaaataaa attatattcc atataatgaa
     2701 aaaaactgat ttactgttat ggtttagtat cttttctttt ttaattagta ctagttattt
     2761 attttttaca gatatcagtc ccgtacatat tctatcggcg atagttatta ttatttcttc
     2821 acttaattta ctcaaaaata acaatagtaa actatacttc actttagcaa gtatactagc
     2881 tggaatcact actattattt ctttaaaaga ctctcttatt gaaatcatac actacatatt
     2941 agagtctaaa acctcattaa tatcaagtat acttagcaat gccccacttt atgatagtta
     3001 taaaatagta attactgttt tatttatata ttctatatta ttcgaatcta taaatacttt
     3061 attttttaat aaatgtttaa ctccaataaa gataaaggaa cgttatagct ttattctatt
     3121 ccctcatttt ttcaatttaa atatgagagg aataaaaaac tatatatttg ataatttata
     3181 tagctttctt attactcaaa tagtttcatt tttagtttat atatccatag tatatgtatc
     3241 aaatatattt ttacttccag aattattatt tatattaata caaataatat ttttcatgca
     3301 tacttcagaa ttagaaaata catacaaaag atttttaatg ctggctgcaa ataaaaatga
     3361 aaaaaatata atattatcta gtttttcaac ttttatatta tctttttcta taagatttta
     3421 ctttttgtta tttttgaata ttccttatat ttttataaat tatttataca ttgataacaa
     3481 agtgtattta atattatcac tacttcctag tatcctcata caattgacac aagaaaatac
     3541 attactagat gactataaat caattgctat agataaaaat ataaatttaa aaattcctta
     3601 taataagttc ctatacttat ctactttagt ttttttagga atgattcaat tttatattat
     3661 taatgaacag gctaattttt ctcgaacagc ttttatgata gtatacttac tgacggttta
     3721 ttctattatt atatttatga tgataaaatt actgttaaaa aataaaaaaa ttcacttcaa
     3781 tgaaataaaa gttaagtaa
//
