LOCUS       BGC0000574              6137 bp    DNA     linear   BCT 28-JAN-2014
DEFINITION  Caulobacter segnis ATCC 21756, complete genome.
ACCESSION   BGC0000574
VERSION     BGC0000574
KEYWORDS    .
SOURCE      Caulobacter segnis ATCC 21756
  ORGANISM  Caulobacter segnis ATCC 21756
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Caulobacter.
COMMENT     URL -- http://www.jgi.doe.gov
            JGI Project ID: 4086217
            Source DNA and organism available from Yves V. Brun
            (ybrun@indiana.edu)
            Contacts: Yves V. Brun (ybrun@indiana.edu)
            Tanja Woyke (microbe@cuba.jgi-psf.org)
            Annotation done by JGI-ORNL and JGI-PGF
            Finishing done by JGI-LANL
            Finished microbial genomes have been curated to close all gaps with
            greater than 98% coverage of at least two independent clones. Each
            base pair has a minimum q (quality) value of 30 and the total error
            rate is less than one per 50000.
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. it is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            ##antiSMASH-Data-START##
            Version      :: False
            Run date     :: 2024-10-17 13:51:54
            NOTE: This is a single region extracted from a larger record!
            Orig. start  :: 2807462
            Orig. end    :: 2813599
            ##antiSMASH-Data-END##
FEATURES             Location/Qualifiers
     sig_peptide     1..63
                     /locus_tag="Cseg_2563"
                     /note="Signal predicted by SignalP 3.0 HMM (Signal peptide
                     probability 0.992) with cleavage site probability 0.986 at
                     residue 21"
     CDS             1..2445
                     /codon_start=1
                     /db_xref="InterPro:IPR001375"
                     /db_xref="InterPro:IPR011042"
                     /gene_functions="biosynthetic-additional
                     (rule-based-clusters) Peptidase_S9"
                     /gene_kind="biosynthetic-additional"
                     /inference="protein motif:PFAM:PF00326"
                     /locus_tag="Cseg_2563"
                     /note="PFAM: peptidase S9 prolyl oligopeptidase active site
                     domain protein; KEGG: ccs:CCNA_02793
                     acylamino-acid-releasing enzyme"
                     /product="peptidase S9 prolyl oligopeptidase active site
                     domain protein"
                     /protein_id="ADG11017.1"
                     /sec_met_domain="Peptidase_S9 (E-value: 1.4e-26, bitscore:
                     82.2, seeds: 64, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MRLFAGVALACALAAAPAQAARPFTIEDQLSVQNFGRVAFSPAGR
                     WLIAERYGRWGDAPSFDHEFLTHQTTSQIFVTDLRANSPPRPLLPQAAKAGDTFGAFSP
                     DGTRVLVFRQVGHRRKMGVATLATGATRWSGLTADPEVWTAQARWRDDTRVVVIARAPD
                     APSILLGAGWQTQARTAAAWSANSRGEASGVALGAGRYAGLNPPPPDYDLAEFDAHSGQ
                     TRVLAHGPFFEILLSPDGRTVAASEEGELVTPSAATAMVRLSSPHRRRRLSLIDLDTGE
                     IRRPCPACDLAPGTWAWSPDGQALVAAARDQPAFDAGYGYWRFDRLGASVALAPRLRVN
                     LVTGGGIANLTGQAAWLGGDPVVLAKPEGAARPDWWRLARQGEVNLTAAFAPPQGRALA
                     VGPKGLLVNTAAGLVRLPPKGQARVIAAGAWQGAGALPGLPIERLVGTVDHAARLLTPE
                     GHTRPAADLPSRARLVATSPSGDLAAIDTDDHGVRTLSLYRPNSPPRPLLTINQALADV
                     AFSRPVAIPHRGPSGEPLTSWLYLPPGGALGDQRPLIIVPYAGDRYDRPPAWFEPGAVT
                     PLTNVQLMVAQGYAVLVPSLPIGLTDEPAPGLAAAILRAVDAAHVQHPVFSADRLAVWG
                     HSFGGWSALMAGAQSPRFKALIASAPPTDLITLHGNLRLASFAVPEVYMTLTGLQGWAE
                     GGQARMGAPPWKDLDRYARNSPLLQVDRLTAPVMLIYGDMDYDPSQVAALFMALSRQGK
                     DAQLLLYRGEGHVIGNPANLRDLHQRVFAFLADVLGPVAAVPRPAALSPSAASPSPIRA
                     SQ"
     subregion       1..6137
                     /aStool="mibig"
                     /contig_edge="False"
                     /label="ribosomal"
                     /subregion_number="1"
                     /tool="antismash"
     region          1..6137
                     /contig_edge="False"
                     /product="unknown"
                     /region_number="1"
                     /subregion_numbers="1"
                     /tool="antismash"
     gene            1..2445
                     /locus_tag="Cseg_2563"
     gene            complement(2331..4184)
                     /locus_tag="Cseg_2564"
     CDS             complement(2331..4184)
                     /codon_start=1
                     /db_xref="InterPro:IPR001962"
                     /db_xref="InterPro:IPR014729"
                     /gene_functions="biosynthetic (rule-based-clusters)
                     lassopeptide: Asn_synthase"
                     /gene_functions="biosynthetic-additional (smcogs)
                     SMCOG1177:asparagine synthase (glutamine-hydrolyzing)
                     (Score: 85.4; E-value: 5.8e-26)"
                     /gene_kind="biosynthetic"
                     /inference="protein motif:PFAM:PF00733"
                     /locus_tag="Cseg_2564"
                     /note="PFAM: asparagine synthase; KEGG: cak:Caul_1986
                     asparagine synthase"
                     /product="asparagine synthase"
                     /protein_id="ADG11018.1"
                     /sec_met_domain="Asn_synthase (E-value: 3.6e-27, bitscore:
                     84.8, seeds: 78, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MGYAALTYPGGLAAAAFDEMVEALIDAGWTLALRAFRLAVLTDGQ
                     APAVSPLMGRGGVAGVLIGEAFDRRATLGGAVARAALDGLADIDPLEAGRHLIETAWGG
                     YVGMWIGRAEAGPTLLRDPSGALEALAWRRDGVTVMSARPLTGRAGPADLAIDWPRIVQ
                     ILADPISAALGPPPLTGLATIDPGAAVHGADGQERSVLWTPAAVVRGARHRPWPSRQDL
                     RRTIDATVAALASDAGPIVCEISGGLDSAIVATSLAASGLGPQLTVNFYGDQPEADERG
                     YAQAVAERIGAPLRTLRREPFAFDETVLAAAGQAARPNFNALDPGYDAGLVGALEAIDA
                     RALFTGHGGDTVFYQVAASALAADLLGGAPCEGSRRARLEEVARRTRRSIWSLAWEAFS
                     GRPSTVSIEGQLLRQEAERIRRVGLTHPWVGGLSSVTPAKRQQIRALVSNLNAHGATGR
                     AERARIVHPLLAQPVVEACLAIPAPILSAGEGERSFAREAFADRLPPSIVGRRSKGEIS
                     VFLNRSLAASAPFLRGFLLEGRLAARGLIDRDELAAALEPEAIVWKDASRDLLTAAALE
                     AWVRHWEARIGEGEAAEGERAAGRGTAATGPRTSARKANTR"
     gene            complement(4187..4837)
                     /locus_tag="Cseg_2565"
     CDS             complement(4187..4837)
                     /codon_start=1
                     /gene_functions="biosynthetic (rule-based-clusters)
                     lassopeptide: PF13471"
                     /gene_functions="biosynthetic-additional
                     (rule-based-clusters) Lasso_Fused_RRE"
                     /gene_kind="biosynthetic"
                     /inference="similar to AA sequence:KEGG:Caul_1985"
                     /locus_tag="Cseg_2565"
                     /note="KEGG: cak:Caul_1985 hypothetical protein"
                     /product="conserved hypothetical protein"
                     /protein_id="ADG11019.1"
                     /sec_met_domain="Lasso_Fused_RRE (E-value: 9e-13, bitscore:
                     37.2, seeds: 20, tool: rule-based-clusters)"
                     /sec_met_domain="PF13471 (E-value: 3.1e-24, bitscore: 74.2,
                     seeds: 84, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MDLWLSAGVYAVMIDDDVVFLDVATNAYFCLPAVGSVLALEGRSL
                     RVAARELAEDLIQAGLASAAAAIEPPPSTPAPVRTARAVLEALPARERPRPRLAHWRQA
                     IMAGLASRAAERRPFAQRLPPPSTGVSPPASEGLLADLDAFRRLQPWLPFDGACLFRSQ
                     MLRDYLLALGHRVDWIFGVRTWPFGAHCWLQAGDLVLDDEAERLIAYHPIMVR"
     gene            complement(4900..5013)
                     /locus_tag="Cseg_2566"
     CDS             complement(4900..5013)
                     /codon_start=1
                     /inference="ab initio prediction:Prodigal:1.4"
                     /locus_tag="Cseg_2566"
                     /product="hypothetical protein"
                     /protein_id="ADG11020.1"
                     /transl_table=11
                     /translation="MTSRFQLLRLGKADRLTRGALVGLLLEDITVARYDPM"
     gene            complement(5125..5238)
                     /locus_tag="Cseg_2567"
     CDS             complement(5125..5238)
                     /codon_start=1
                     /inference="ab initio prediction:Prodigal:1.4"
                     /locus_tag="Cseg_2567"
                     /product="hypothetical protein"
                     /protein_id="ADG11021.1"
                     /transl_table=11
                     /translation="MTKTHRLIRLGDAQRLTQGTLTPGLPEDFLPGHYMPG"
     gene            complement(5340..5468)
                     /locus_tag="Cseg_2568"
     CDS             complement(5340..5468)
                     /codon_start=1
                     /inference="ab initio prediction:Prodigal:1.4"
                     /locus_tag="Cseg_2568"
                     /product="hypothetical protein"
                     /protein_id="ADG11022.1"
                     /transl_table=11
                     /translation="MTKKNATQAPRLVRVGDAHRLTQGAFVGQPEAVNPLGREIQG"
     gene            complement(5541..6137)
                     /locus_tag="Cseg_2569"
     CDS             complement(5541..6137)
                     /codon_start=1
                     /db_xref="InterPro:IPR000524"
                     /gene_functions="regulatory (smcogs) SMCOG1071:GntR family
                     transcriptional regulator (Score: 54.2; E-value: 3e-16)"
                     /gene_kind="regulatory"
                     /inference="protein motif:PFAM:PF00392"
                     /locus_tag="Cseg_2569"
                     /note="KEGG: cak:Caul_2237 GntR family transcriptional
                     regulator; PFAM: regulatory protein GntR HTH; SMART:
                     regulatory protein GntR HTH"
                     /product="transcriptional regulator, GntR family"
                     /protein_id="ADG11023.1"
                     /transl_table=11
                     /translation="MTAHGWEPALVRDRDPFDRTLETLRQRLTRAGPLQGAALPISGLA
                     EELGVSPTPVREVLARLAGEGLIARTPQGYAALLLDPAGLAELYDLASVLVAAAVQSGA
                     QAGDGFDLADPLSSAQAAPNRALAQACARVQAQLAPLARAEAEVFGAGSGGVAGDDWAD
                     RKALLRAVRRHYARRAAQSGRILAVALGLLKSPRI"
ORIGIN
        1 atgcgacttt tcgcaggggt ggcgctggct tgcgcgctcg ccgcggcgcc ggctcaggcc
       61 gcccgtccct tcacgatcga ggaccagctt tcggtccaga acttcgggcg ggtcgccttc
      121 tcgcccgccg gccgctggct gatcgccgag cgctatgggc gctggggcga cgcgcccagc
      181 ttcgaccacg agttcctgac ccatcagacc accagtcaga tcttcgtcac cgatctgcgt
      241 gccaacagtc cgccgcgccc gctcctgccc caggccgcca aggcgggcga caccttcgga
      301 gccttctcgc cggacgggac acgggtcttg gtcttccggc aggtggggca tcggcggaag
      361 atgggcgtgg ccacgctggc gaccggggcg acgcgatggt cgggcctgac cgccgatccc
      421 gaggtgtgga ccgcccaggc ccgctggcgg gacgatacgc gcgtcgtcgt catcgcgcgc
      481 gcgcccgacg ccccgtcgat cctgctcggc gcgggctggc agacccaggc gcgcaccgcg
      541 gcggcctgga gcgccaacag ccgcggcgag gcgtcaggcg tcgcgctcgg cgcgggccgc
      601 tacgccgggc tcaatccgcc gccgcccgac tacgacctgg cggaattcga cgcccacagc
      661 ggccagacgc gcgtgctggc gcacggcccc ttcttcgaga tcttgctgtc gcccgacggc
      721 cgaaccgtcg cggcgagcga agagggcgag ctcgtcacgc ccagcgccgc gacggcgatg
      781 gttcgcctgt cgagccccca tcgccgtcgg cgcctgtccc tcatcgacct cgacaccggt
      841 gaaatccgcc gcccctgccc ggcctgcgat cttgccccgg ggacctgggc ctggtcgccg
      901 gacggccagg cgctggtggc cgcggcgcgc gatcagccgg cgttcgacgc cggctatggc
      961 tactggcggt tcgatcggct tggcgcatcg gtcgccctgg ccccgcggct gcgcgtcaat
     1021 ctcgtcaccg gcggcgggat cgcgaacctg accggccagg cggcctggct gggcggcgat
     1081 ccggtcgtcc tggccaagcc cgagggcgcg gcgcggcctg actggtggcg cctcgcgcgc
     1141 cagggcgaag tcaacctgac ggcggccttc gccccgccgc aaggtcgggc gctggcggtc
     1201 ggccccaaag gcctgctggt caatacggcg gcggggctcg tccggctgcc gccgaaaggc
     1261 caagctcggg tcatcgcggc cggcgcctgg caaggcgccg gcgccctgcc cgggctgccc
     1321 atagagcgcc tcgtcggaac cgtggatcat gccgcgcggc tgctgacgcc cgagggtcac
     1381 acccggccgg ccgccgatct gccgagccgc gcccggctgg tggcgacctc gcccagcggc
     1441 gatctcgcgg ccatagacac cgacgaccat ggggtccgca cgctcagcct ctatcgccca
     1501 aactcgccgc cgcgcccgct gctgaccatc aaccaggccc ttgccgatgt cgccttcagc
     1561 cggccggtgg cgatccccca ccgtgggcca agcggcgagc ctctgaccag ctggctctac
     1621 ctcccgccgg gcggcgcgct gggggaccag cgcccgctga tcatcgtgcc ctatgccggc
     1681 gatcgctatg atcggccgcc cgcctggttc gagccgggcg cggtcacgcc tctgaccaat
     1741 gtccagttga tggtggccca gggctatgcg gtcctggttc ccagcctgcc gatcggcttg
     1801 acggacgagc ccgcgccggg tctcgccgcc gcgatcctgc gggcggtcga cgccgcgcat
     1861 gtgcagcatc ccgtcttctc ggccgatcgc ctggccgtct ggggccacag tttcgggggc
     1921 tggtcggccc tgatggccgg cgcgcaatcg ccgcggttca aggcgctgat cgcctcggcc
     1981 ccgccgaccg atctgattac cctgcatggc aaccttcgtc tcgccagctt cgcggtcccg
     2041 gaggtctata tgacgctcac cgggctgcag ggctgggccg agggcggcca ggccaggatg
     2101 ggcgccccgc cctggaaaga cctcgatcgg tatgctcgca acagcccgct gttgcaggtc
     2161 gaccggctca cggcgccggt gatgctgatc tatggcgaca tggattatga cccaagccag
     2221 gtcgcggccc tgttcatggc gctatcacga cagggcaaag atgcgcagct gctcctctat
     2281 cgcggcgagg gccatgtgat cggcaatccg gccaacctgc gcgacctgca tcaacgggtg
     2341 ttcgccttcc tcgccgacgt cctgggaccg gtcgccgccg tcccgcgccc cgcggccctc
     2401 tcgccctcgg cggcttcccc ctcgccgatc cgcgcctccc aatgacggac ccaggcctcc
     2461 agggccgcgg cggtgaggag atcgcgggag gcgtccttcc agacgatggc ctcgggctcg
     2521 agcgcggccg ccagttcgtc gcggtcgatc aggccccgcg ccgccagacg gccttccagc
     2581 agaaagccgc gcagaaacgg cgcgctagcc gcgaggctgc gattgaggaa gacgctgatt
     2641 tcacccttcg agcgccgccc gacgatcgat ggaggcaacc ggtcggcgaa cgcctcgcgg
     2701 gcgaaactac gctcgccttc ccccgcgctg agtatgggcg cggggatcgc caggcaggcc
     2761 tcgaccaccg gctgggccag caaggggtgg acgatacggg cgcgctcggc ccgaccggtg
     2821 gcgccatggg cgttgaggtt cgagaccagc gcccggatct gctgtcgctt ggccggggtg
     2881 acgctgctta gcccgcccac ccaaggatgg gtcaggccca cccgccggat ccgttcggct
     2941 tcctggcgca agagttggcc ttcgatcgac accgtcgagg gacggccgct gaacgcctcc
     3001 caggccaggc tccaaatcga ccgcctcgtt cgccgcgcga cctcctccag ccgcgcgcgt
     3061 cgcgatccct cgcaaggcgc gccgccgagc aggtccgcgg ccagggcgct ggccgccacc
     3121 tgataaaaca ccgtgtcgcc gccgtggccg gtgaacagcg cccgagcgtc gattgcctcc
     3181 agcgccccga ccagccccgc gtcgtagcca ggatcaaggg cgttgaagtt tggtcgcgcc
     3241 gcctggccgg cggcggccag caccgtctcg tcgaacgcga acggttcgcg ccggagcgtg
     3301 cgcaggggcg cgccgatgcg ctcggccacc gcctgggcgt aaccgcgctc atcggcttct
     3361 ggctggtcgc cgtagaaatt cacggtcagc tgtgggccaa gaccgctggc cgccaggctg
     3421 gtggcgacga tcgccgagtc gaggccgccg gaaatctcgc agacaatcgg gcccgcgtcg
     3481 ctggccaggg ccgccaccgt ggcgtcgatc gtccggcgca ggtcctggcg gctcggccag
     3541 ggccgatggc gcgcgccgcg aacgaccgcc gcgggggtcc agagcaccga gcgctcctgc
     3601 ccgtccgcgc catgaacggc ggcgccggga tcgatcgtgg ccaggcccgt caggggcgga
     3661 ggaccgaggg ccgcgctgat tgggtccgcc aggatctgga cgatccgcgg ccagtcgatc
     3721 gccaagtccg ccggaccggc gcgaccggtg agcggacgag cgctcatcac cgtgacgccg
     3781 tcgcgccgcc aggccagcgc ctccagggcc cctgacggat cgcgcagcaa ggttggcccc
     3841 gcttcggcgc gaccgatcca catcccgaca tagccgcccc aagcggtctc gatcaggtga
     3901 cgaccggcct cgagcggatc gatgtcggca agaccgtcga gcgccgcgcg cgcgaccgcg
     3961 ccgcccaggg tcgcccgtcg gtcaaaggct tcaccgatca acacccccgc cacgccgccc
     4021 cgtcccatca gcggcgaaac ggccggcgcc tggccatcgg tcaggaccgc cagccgaaac
     4081 gcccgcagcg ccagggtcca gccggcgtcg atcagcgcct cgaccatctc gtcgaacgcg
     4141 gcggcggcca gaccgcccgg ataggtcaag gccgcgtagc ccatggctag cgcaccatga
     4201 tcgggtgata ggcgatgagc cgttcggcct cgtcatcaag caccagatcg cccgcctgca
     4261 gccagcagtg cgccccaaac ggccaggtgc gcacgccgaa gatccagtcg acgcggtggc
     4321 ccagggcgag gagatagtcg cgcagcatct ggctgcgaaa cagacaggcg ccgtcgaagg
     4381 gcaaccaggg ctggagtcgc cgaaaggcgt cgaggtccgc cagcagccct tcgctggcgg
     4441 gcggagagac cccggtggac ggcggcggca ggcgctgggc gaagggacgc cgctcggcgg
     4501 cccggctggc gagccccgcc atgatggctt gccgccaatg ggccaggcgt gggcgcgggc
     4561 gttcgcgggc cggcagcgcc tccagcacgg cccgcgccgt gcggacgggc gctggcgtgc
     4621 tcggcggcgg ctcgatcgcg gcggcggcgc tggccaggcc cgcctggatc aggtcttcgg
     4681 ccagctcacg cgccgcgacg cgcaaggacc gtccctctag ggccagcacc gacccgaccg
     4741 cgggcagaca gaaataggcg ttggtcgcga catcgaggaa gacgacatcg tcatcgatca
     4801 tgaccgcgta cacgccggcg ctgagccaca ggtccatggc ctgctccttg tctggaagaa
     4861 aggcttgggc gcccggcgct cggggccaag gccgccgtct cacatcgggt cgtagcgggc
     4921 cacggtgatg tcctcgagca gcaggcccac cagcgcgccc cgcgtcagcc tgtcggcctt
     4981 gcccaatcgc agcagttgaa acctagacgt catcggccgg ctccctttcg cgtccgccgc
     5041 gacggggcgg cgcgaacaag gaggcggcgc gccggtcgta tattcaaacc tatattcgaa
     5101 acgcgtcgcg ccgccccttg tgggtcagcc cggcatgtag tggccaggca ggaaatcctc
     5161 cggcaggccc ggagtgagcg tgccttgggt cagacgctgg gcgtcgccca ggcggatcag
     5221 gcgatgggtc ttggtcacgg gatggccctt tcaggtgatg ggccgcgcgg cggcccggtt
     5281 gcggagaaga acggcggcgc ggcggggacg gcccctcgcg cgccgccgcc gtcggcggct
     5341 cagccttgga tttcgcggcc gagcggattg accgcttcgg gctggccgac gaacgcgcct
     5401 tgcgtcaggc gatgggcgtc gccgacgcgc acgagacgcg gggcttgggt ggcgttcttc
     5461 ttggtcatgg tcgtctcctt ttcgagaagc tgccaaatgc agcctctcaa tcacgcgacc
     5521 gtcaggccct atattcaaat ctatattcgg ggagatttga gcaggcccag agccacggcg
     5581 aggatgcggc cgctctgggc cgcgcggcgg gcgtagtggc gacgcacggc gcgcagcaag
     5641 gccttgcgat cggcccaatc atcgcccgcg acgccgccgc tccccgcgcc gaagacttcg
     5701 gcctcggccc gggccagcgg ggccaactgg gcctggacgc gcgcgcaggc ttgcgccagg
     5761 gcgcgattgg gcgcggcctg ggcgctagac aatggatcgg ccagatcaaa gccgtcgcca
     5821 gcctgggcgc cagactgcac ggccgcggcg accaggacgc tggccaggtc atagagctcg
     5881 gcgagaccgg ccggatcaag cagcagcgcc gcgtagccct gcggcgtgcg cgcgatcagc
     5941 ccctccccgg ccaggcgcgc caagacctcg cgaaccgggg ttgggctcac gcccagttcc
     6001 tcggccaggc cgctgatcgg cagggccgcg ccctgcaagg gaccggcccg cgtcaagcgc
     6061 tggcgcagcg tctctagggt tcggtcgaat ggatcgcgat ctcgcaccag cgcgggctcc
     6121 cagccgtggg cggtcat
//
