BGC0000636: carotenoid biosynthetic gene cluster from Brevibacterium linens
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 1 - 14,398 nt. (total: 14,398 nt).
This entry is originally from NCBI GenBank AF139916.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
Biosynthesis
History
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0000636
Short description carotenoid biosynthetic gene cluster from Brevibacterium linens
Status Quality: questionable
The quality level of this entry.

Status: active
The status of this entry.

Completeness: unknown
Whether the entry covers everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • terpene (Unknown)
Loci
AF139916.1
via
Compounds
  • carotenoid
Species Brevibacterium linens [taxonomy]
References
Chemical products information
carotenoid Evidence:
Copy SMILES
C46H90O6
Chemical database entries
PubCHEM
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • AAF65580.1
 3 - 1373 (+) hypothetical protein
    copy AA seq
    copy Nt seq
    • AAF65581.1
    • crtB
    		 1535 - 2434 (+) phytoene synthase
      copy AA seq
      copy Nt seq
      • AAF65582.1
      • crtI
      		 2431 - 4017 (+) phytoene desaturase
        copy AA seq
        copy Nt seq
        • AAF65583.1
        		 4044 - 4856 (-) hypothetical protein
          copy AA seq
          copy Nt seq
          • AAF65584.1
          • cpd1
          		 4923 - 6386 (-) hypothetical DNA photolyase
            copy AA seq
            copy Nt seq
            • AAF65585.1
            • crtK
            		 6386 - 6904 (-) hypothetical protein
              copy AA seq
              copy Nt seq
              • AAF65586.1
              • crtU
              		 6951 - 8504 (-) betacarotene desaturase
                copy AA seq
                copy Nt seq
                • AAF65587.1
                • crtYd
                		 8501 - 8824 (-) lycopene cyclase
                  copy AA seq
                  copy Nt seq
                  • AAF65588.1
                  • crtYc
                  		 8814 - 9191 (-) lycopene cyclase
                    copy AA seq
                    copy Nt seq
                    • AAF65589.1
                    		 9188 - 10417 (-) hypothetical protein
                      copy AA seq
                      copy Nt seq
                      • AAF65590.1
                      • crtE
                      		 10414 - 11571 (-) GGPP synthase
                        copy AA seq
                        copy Nt seq
                        • AAF65591.1
                        • idi
                        		 11471 - 12019 (-) isopentenyl diphosphate isomerase
                          copy AA seq
                          copy Nt seq
                          • AAF65592.1
                          		 12190 - 13446 (+) hypothetical protein
                            copy AA seq
                            copy Nt seq
                            • AAF65593.1
                            		 13472 - 14167 (+) hypothetical protein
                              copy AA seq
                              copy Nt seq
                              Biosynthesis information
                              Annotation changelog

                              Entry version: 2

                              Date
                              Changes
                              Submitters
                              Reviewers
                              2019-10-16
                              Migrated from v1.4
                              • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                              • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

                              Entry version: 1

                              Date
                              Changes
                              Submitters
                              Reviewers
                              2015-06-12
                              Submitted
                              • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                              • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                              Similar known gene clusters from MIBiG 4.0
                              Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
                              Click on reference genes to show details of similarities to genes within the current region.
                              Click on an accession to open that entry in the MiBIG database.