BGC0000713: ribostamycin biosynthetic gene cluster from Streptomyces ribosidificus
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 1 - 31,892 nt. (total: 31,892 nt).
This entry is originally from NCBI GenBank AJ748131.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
History
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0000713
Short description ribostamycin biosynthetic gene cluster from Streptomyces ribosidificus
Status Minimal annotation: yes
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: Unknown
Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • Saccharide
Loci NCBI GenBank: AJ748131.1
Compounds
  • ribostamycin
Species Streptomyces ribosidificus [taxonomy]
References
Chemical products information
ribostamycin
Copy SMILES
C17H34N4O10
Chemical database entries
PubCHEM
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • CAG34703.1
  • racP
 16 - 435 (-) RacP protein
copy AA seq
copy Nt seq
  • CAG34704.1
  • racO
 438 - 1439 (-) RacO protein
copy AA seq
copy Nt seq
  • CAG34705.1
  • racN
 1939 - 2403 (-) RacN protein
copy AA seq
copy Nt seq
  • CAG34706.1
  • rbmI
 2629 - 3492 (+) aminoglycoside 3-N-acetyltransferase
copy AA seq
copy Nt seq
  • CAG34707.1
  • racM
 3521 - 5023 (-) RacM protein
copy AA seq
copy Nt seq
  • CAG34708.1
  • racL
 5076 - 7250 (-) RacL protein
copy AA seq
copy Nt seq
  • CAG34709.1
  • rbmH
 7310 - 8560 (-) putative glutamate-1-semialdehyde aminotransferase
copy AA seq
copy Nt seq
  • CAG34710.1
  • racK
 8674 - 10638 (+) RacK protein
copy AA seq
copy Nt seq
  • CAG34711.1
  • racJ
 10671 - 11495 (-) RacJ protein
copy AA seq
copy Nt seq
  • CAG34712.1
  • racI
 11488 - 12546 (-) RacI protein
copy AA seq
copy Nt seq
  • CAG34713.1
  • racH
 12784 - 13683 (-) RacH protein
copy AA seq
copy Nt seq
  • CAG34714.1
  • rbmG
 14404 - 16029 (-) putative sugar-alcohol dehydrogenase
copy AA seq
copy Nt seq
  • CAG34715.1
  • rbmF
 16089 - 17756 (-) putative ABC transporter
copy AA seq
copy Nt seq
  • CAG34716.1
  • rbmE
 17870 - 19672 (-) putative ABC transporter
copy AA seq
copy Nt seq
  • CAG34717.1
  • rbmD
 19720 - 20985 (-) putative glycosyltransferase protein
copy AA seq
copy Nt seq
  • CAG34718.1
  • rbmA
 21059 - 22234 (-) 2-deoxy-scyllo-inosose synthase
copy AA seq
copy Nt seq
  • CAG34719.1
  • rbmB
 22291 - 23565 (-) putative 2-deoxy-scyllo-inosose aminotransferase
copy AA seq
copy Nt seq
  • CAG34720.1
  • rbmC
 23736 - 24758 (-) putative dehydrogenase
copy AA seq
copy Nt seq
  • CAG34721.1
  • racA
 24975 - 25475 (+) RacA protein
copy AA seq
copy Nt seq
  • CAG34722.1
  • racB
 26093 - 26626 (+) RacB protein
copy AA seq
copy Nt seq
  • CAG34723.1
  • racC
 26655 - 27788 (+) RacC protein
copy AA seq
copy Nt seq
  • CAG34724.1
  • rph
 27872 - 28666 (+) aminoglycoside phosphotransferase
copy AA seq
copy Nt seq
  • CAG34725.1
  • racD
 28912 - 29286 (-) RacD protein
copy AA seq
copy Nt seq
  • CAG34726.1
  • racE
 29310 - 30119 (-) RacE protein
copy AA seq
copy Nt seq
  • CAG34727.1
  • racF
 30172 - 30945 (+) RacF protein
copy AA seq
copy Nt seq
  • CAG34728.1
  • racG
 31296 - 31892 (-) VioH-like protein
copy AA seq
copy Nt seq
Annotation changelog
MIBiG version Submitter Notes
1.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Submitted
2.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Migrated from v1.4
3.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Updated bioactivity data
3.1
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Update chemical activity to schema version 2.11
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.