BGC0000725: alginate biosynthetic gene cluster from Pseudomonas aeruginosa PAO1
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 3,962,825 - 3,979,476 nt. (total: 16,652 nt).
This entry is originally from NCBI GenBank AE004091.2.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
History
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0000725
Short description alginate biosynthetic gene cluster from Pseudomonas aeruginosa PAO1
Status Minimal annotation: yes
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: Unknown
Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • Saccharide
Loci NCBI GenBank: AE004091.2
Compounds
  • alginate
Species Pseudomonas aeruginosa PAO1 [taxonomy]
References
Chemical products information
alginate
Copy SMILES
C22H33O23
Chemical database entries
PubCHEM
PubCHEM
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • PA3540
  • AAG06928.1
  • algD
 3962825 - 3964135 (+) GDP-mannose 6-dehydrogenase AlgD
copy AA seq
copy Nt seq
  • PA3541
  • AAG06929.1
  • alg8
 3964275 - 3965759 (+) alginate biosynthesis protein Alg8
copy AA seq
copy Nt seq
  • PA3542
  • AAG06930.1
  • alg44
 3965842 - 3967011 (+) alginate biosynthesis protein Alg44
copy AA seq
copy Nt seq
  • PA3543
  • AAG06931.1
  • algK
 3967025 - 3968452 (+) alginate biosynthetic protein AlgK precursor
copy AA seq
copy Nt seq
  • PA3544
  • AAG06932.1
  • algE
 3968449 - 3969921 (+) Alginate production outer membrane protein AlgE precursor
copy AA seq
copy Nt seq
  • PA3545
  • AAG06933.1
  • algG
 3969942 - 3971573 (+) alginate-c5-mannuronan-epimerase AlgG
copy AA seq
copy Nt seq
  • PA3546
  • AAG06934.1
  • algX
 3971586 - 3973010 (+) alginate biosynthesis protein AlgX
copy AA seq
copy Nt seq
  • PA3547
  • AAG06935.1
  • algL
 3973014 - 3974117 (+) poly(beta-d-mannuronate) lyase precursor AlgL
copy AA seq
copy Nt seq
  • PA3548
  • AAG06936.1
  • algI
 3974359 - 3975921 (+) alginate o-acetyltransferase AlgI
copy AA seq
copy Nt seq
  • PA3549
  • AAG06937.1
  • algJ
 3975936 - 3977111 (+) alginate o-acetyltransferase AlgJ
copy AA seq
copy Nt seq
  • PA3550
  • AAG06938.1
  • algF
 3977184 - 3977834 (+) alginate o-acetyltransferase AlgF
copy AA seq
copy Nt seq
  • PA3551
  • AAG06939.1
  • algA
 3978031 - 3979476 (+) phosphomannose isomerase / guanosine 5'-diphospho-D-mannose pyrophosphorylase
copy AA seq
copy Nt seq
Annotation changelog
MIBiG version Submitter Notes
1.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Submitted
2.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Migrated from v1.4
  • Updated reference publication(s) (MIBiG Annotathon)
  • Updated loci
3.0
  • Hidden contributor (ID: H5KVDLSVQ3TJW7SKCDNBDEVC, no GDPR consent given).
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Update compound structure (SMILES) for alginate
  • Linked new PubChem id for alginate (pubchem:131704328)
  • Updated bioactivity data
3.1
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Update chemical activity to schema version 2.11
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.