BGC0000768: gellan polysaccharide biosynthetic gene cluster from Sphingomonas elodea ATCC 31461
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 1 - 31,500 nt. (total: 31,500 nt).
This entry is originally from NCBI GenBank AY217008.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
Biosynthesis
History
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0000768
Short description gellan polysaccharide biosynthetic gene cluster from Sphingomonas elodea ATCC 31461
Status Quality: questionable
The quality level of this entry.

Status: active
The status of this entry.

Completeness: unknown
Whether the entry covers everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • saccharide (None)
Loci
AY217008.1
via
Compounds
  • gellan polysaccharide
Species Sphingomonas elodea ATCC 31461 [taxonomy]
References
Chemical products information
gellan polysaccharide Evidence:
(no structure information available)
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • AAP57678.1
  • gyrB
 1 - 1191 (+) putative DNA gyrase subunit B
    copy AA seq
    copy Nt seq
    • AAP57679.1
    		 1329 - 2363 (+) hypothetical protein
      copy AA seq
      copy Nt seq
      • AAP57680.1
      • fhuA
      		 2535 - 4592 (-) putative ferrichrome-iron receptor
        copy AA seq
        copy Nt seq
        • AAP57681.1
        		 4642 - 5799 (+) conserved hypothetical protein
          copy AA seq
          copy Nt seq
          • AAP57682.1
          		 6033 - 6602 (-) putative acetyltransferase
            copy AA seq
            copy Nt seq
            • AAP57683.1
            		 6589 - 7419 (-) conserved hypothetical protein
              copy AA seq
              copy Nt seq
              • AAP57684.1
              • gelQ
              		 7538 - 8479 (+) putative rhamnosyl transferase
                copy AA seq
                copy Nt seq
                • AAP57685.1
                • gelI
                		 8539 - 9441 (-) GelI
                  copy AA seq
                  copy Nt seq
                  • AAP57686.1
                  • gelK
                  		 9583 - 10629 (+) beta-1,4-glucuronosyltransferase
                    copy AA seq
                    copy Nt seq
                    • AAP57687.1
                    • gelL
                    		 10626 - 11492 (+) glucosyl transferase
                      copy AA seq
                      copy Nt seq
                      • AAP57688.1
                      • gelJ
                      		 11543 - 12931 (-) GelJ
                        copy AA seq
                        copy Nt seq
                        • AAP57689.1
                        • gelF
                        		 13546 - 14847 (+) GelF
                          copy AA seq
                          copy Nt seq
                          • AAP57690.1
                          • gelD
                          		 14862 - 15764 (+) putative polysaccharide export protein
                            copy AA seq
                            copy Nt seq
                            • AAP57691.1
                            • gelC
                            		 15800 - 17146 (+) GelC
                              copy AA seq
                              copy Nt seq
                              • AAP57692.1
                              • gelE
                              		 17146 - 17853 (+) GelE
                                copy AA seq
                                copy Nt seq
                                • AAP57693.1
                                • gelM
                                		 17864 - 18745 (+) GelM
                                  copy AA seq
                                  copy Nt seq
                                  • AAP57694.1
                                  • gelN
                                  		 18729 - 19427 (+) GelN
                                    copy AA seq
                                    copy Nt seq
                                    • AAP57695.1
                                    • atrD
                                    		 19489 - 20883 (-) putative secretion protein
                                      copy AA seq
                                      copy Nt seq
                                      • AAP57696.1
                                      • atrB
                                      		 20880 - 23066 (-) putative secretion protein
                                        copy AA seq
                                        copy Nt seq
                                        • AAP57697.1
                                        • gelB
                                        		 23703 - 25115 (+) glucosyl-isoprenylphosphate transferase
                                          copy AA seq
                                          copy Nt seq
                                          • AAP57698.1
                                          • rmlA
                                          		 25234 - 26112 (+) glucose-1-phosphate thymidylyltransferase
                                            copy AA seq
                                            copy Nt seq
                                            • AAP57699.1
                                            • rmlC
                                            		 26109 - 26675 (+) dTDP-6-deoxy-D-glucose-3,5-epimerase
                                              copy AA seq
                                              copy Nt seq
                                              • AAP57700.1
                                              • rmlB
                                              		 26679 - 27740 (+) dTDP-D-glucose-4,6-dehydratase
                                                copy AA seq
                                                copy Nt seq
                                                • AAP57701.1
                                                • rmlD
                                                		 27740 - 28606 (+) dTDP-6-deoxy-L-mannose-dehydrogenase
                                                  copy AA seq
                                                  copy Nt seq
                                                  • AAP57702.1
                                                  		 28654 - 29562 (+) conserved hypothetical protein
                                                    copy AA seq
                                                    copy Nt seq
                                                    • AAP57703.1
                                                    		 29537 - 30166 (-) conserved hypothetical protein
                                                      copy AA seq
                                                      copy Nt seq
                                                      Biosynthesis information
                                                      Annotation changelog

                                                      Entry version: 4

                                                      Date
                                                      Changes
                                                      Submitters
                                                      Reviewers
                                                      2022-10-07
                                                      Update chemical activity to schema version 2.11
                                                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

                                                      Entry version: 3

                                                      Date
                                                      Changes
                                                      Submitters
                                                      Reviewers
                                                      2022-09-15
                                                      Updated bioactivity data
                                                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

                                                      Entry version: 2

                                                      Date
                                                      Changes
                                                      Submitters
                                                      Reviewers
                                                      2019-10-16
                                                      Migrated from v1.4
                                                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

                                                      Entry version: 1

                                                      Date
                                                      Changes
                                                      Submitters
                                                      Reviewers
                                                      2015-06-12
                                                      Submitted
                                                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                      Similar known gene clusters from MIBiG 4.0
                                                      Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
                                                      Click on reference genes to show details of similarities to genes within the current region.
                                                      Click on an accession to open that entry in the MiBIG database.