BGC0000773

BGC0000773: lipopolysaccharide biosynthetic gene cluster from Escherichia coli

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Location: 1 - 15,943 nt. (total: 15,943 nt).
This entry is originally from NCBI GenBank AF125322.1.

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core biosynthetic genes

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Gene details

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General

Compounds

Genes

Biosynthesis

History

KnownClusterBlast

General information about the BGC

MIBiG accession	BGC0000773
Short description	lipopolysaccharide biosynthetic gene cluster from Escherichia coli
Status	Quality: questionable The quality level of this entry. Status: active The status of this entry. Completeness: unknown Whether the entry covers everything needed for the pathway producing the compound(s)
Biosynthetic class(es)	saccharide (None)
Loci	AF125322.1 via
Compounds	lipopolysaccharide
Species	Escherichia coli [taxonomy]
References	[1] Genetic organization of the O7-specific lipopolysaccharide biosynthesis cluster of Escherichia coli VW187 (O7:K1). Marolda CL et al., Microbiology (Reading) (1999) PMID:10517601 [2] Genetic analysis of the dTDP-rhamnose biosynthesis region of the Escherichia coli VW187 (O7:K1) rfb gene cluster: identification of functional homologs of rfbB and rfbA in the rff cluster and correct location of the rffE gene. Marolda CL et al., J Bacteriol (1995) PMID:7559340 [3] Identification, expression, and DNA sequence of the GDP-mannose biosynthesis genes encoded by the O7 rfb gene cluster of strain VW187 (Escherichia coli O7:K1). Marolda CL et al., J Bacteriol (1993) PMID:7677991 [4] The GalF protein of Escherichia coli is not a UDP-glucose pyrophosphorylase but interacts with the GalU protein possibly to regulate cellular levels of UDP-glucose. Marolda CL et al., Mol Microbiol (1996) PMID:8971705 [5] Bacterial polysaccharide synthesis and gene nomenclature. Reeves PR et al., Trends Microbiol (1996) PMID:9004408 [6] Promoter region of the Escherichia coli O7-specific lipopolysaccharide gene cluster: structural and functional characterization of an upstream untranslated mRNA sequence. Marolda CL et al., J Bacteriol (1998) PMID:9620955

Chemical products information

lipopolysaccharide Evidence:

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C₂₀₅H₃₆₆N₃O₁₁₇P₅

Chemical database entries
PubCHEM

List of genes involved in compound(s) production

Identifiers	Position	Product	Extra
AAC63611.1 galF	22 - 930 (+)	GalF	copy AA seq copy Nt seq
AAC63612.1 rmlB	1298 - 2383 (+)	RmlB	copy AA seq copy Nt seq
AAC63613.1 rmlD	2383 - 3288 (+)	RmlD	copy AA seq copy Nt seq
AAC63614.1 rmlA	3347 - 4228 (+)	RmlA	copy AA seq copy Nt seq
AAC63615.1 rmlC	4233 - 4784 (+)	RmlC	copy AA seq copy Nt seq
AAD44153.1 wzx	4788 - 6218 (+)	Wzx	copy AA seq copy Nt seq
AAD44154.1 vioA	6221 - 7336 (+)	VioA	copy AA seq copy Nt seq
AAD44155.1 vioB	7338 - 7916 (+)	VioB	copy AA seq copy Nt seq
AAD44156.1 wbbA	7913 - 8659 (+)	WbbA	copy AA seq copy Nt seq
AAD44157.1 wbbB	8659 - 9321 (+)	WbbB	copy AA seq copy Nt seq
AAD44158.1 wzy	9478 - 10629 (+)	Wzy	copy AA seq copy Nt seq
AAD44159.1 wbbC	10700 - 11746 (+)	WbbC	copy AA seq copy Nt seq
AAC27537.1 wbbD	11761 - 12588 (+)	WbbD	copy AA seq copy Nt seq
AAC27538.1 manC	12585 - 14009 (+)	ManC	copy AA seq copy Nt seq
AAC27539.1 manB	14043 - 15404 (+)	ManB	copy AA seq copy Nt seq
AAC27540.1 gnd	15568 - >15943 (+)	Gnd	copy AA seq copy Nt seq

Biosynthesis information

Annotation changelog

Entry version: 2

Date

Changes

Submitters

Reviewers

2019-10-16

Migrated from v1.4

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Entry version: 1

Date

Changes

Submitters

Reviewers

2015-06-12

Submitted

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(ID: AAAAAAAAAAAAAAAAAAAAAAAA)

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