BGC0000784: O-antigen biosynthetic gene cluster from Pseudomonas aeruginosa
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 1 - 17,453 nt. (total: 17,453 nt).
This entry is originally from NCBI GenBank AF498400.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
History
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0000784
Short description O-antigen biosynthetic gene cluster from Pseudomonas aeruginosa
Status Minimal annotation: yes
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: Unknown
Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • Saccharide
Loci NCBI GenBank: AF498400.1
Compounds
  • O-antigen
Species Pseudomonas aeruginosa [taxonomy]
References
Chemical products information
O-antigen
(no structure information available)
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • AAM27535.1
 3 - 104 (+) RpsA
copy AA seq
copy Nt seq
  • AAM27536.1
 241 - 525 (+) HimD
copy AA seq
copy Nt seq
  • AAM27537.1
 582 - 869 (+)
copy AA seq
copy Nt seq
  • AAM27538.1
 1284 - 2321 (+) Wzz
copy AA seq
copy Nt seq
  • AAM27539.1
 2495 - 2770 (+)
copy AA seq
copy Nt seq
  • AAM27540.1
 2982 - 4295 (+)
copy AA seq
copy Nt seq
  • AAM27541.1
 4354 - 5301 (+)
copy AA seq
copy Nt seq
  • AAM27542.1
 5306 - 5890 (+)
copy AA seq
copy Nt seq
  • AAM27543.1
 5887 - 6969 (+)
copy AA seq
copy Nt seq
  • AAM27544.1
 6966 - 8198 (+)
copy AA seq
copy Nt seq
  • AAM27545.1
 8198 - 9625 (+)
copy AA seq
copy Nt seq
  • AAM27546.1
 9680 - 11104 (+)
copy AA seq
copy Nt seq
  • AAM27547.1
 11110 - 12000 (+)
copy AA seq
copy Nt seq
  • AAM27548.1
 12359 - 13324 (+)
copy AA seq
copy Nt seq
  • AAM27549.1
 13378 - 14502 (+)
copy AA seq
copy Nt seq
  • AAM27550.1
 14499 - 15458 (+)
copy AA seq
copy Nt seq
  • AAM27551.1
 15455 - 16480 (+)
copy AA seq
copy Nt seq
  • AAM27552.1
 16611 - >17453 (+)
copy AA seq
copy Nt seq
Annotation changelog
MIBiG version Submitter Notes
1.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Submitted
2.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Migrated from v1.4
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.