BGC0000787: O-antigen biosynthetic gene cluster from Escherichia coli
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 1 - 13,663 nt. (total: 13,663 nt).
This entry is originally from NCBI GenBank AY493508.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
Biosynthesis
History
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0000787
Short description O-antigen biosynthetic gene cluster from Escherichia coli
Status Quality: questionable
The quality level of this entry.

Status: active
The status of this entry.

Completeness: unknown
Whether the entry covers everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • saccharide (None)
Loci
AY493508.1
via
Compounds
  • O-antigen
Species Escherichia coli [taxonomy]
References
Chemical products information
O-antigen Evidence:
(no structure information available)
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • AAR90882.1
  • galF
 1 - 894 (+) UDP-glucose pyrophosphorylase
    copy AA seq
    copy Nt seq
    • AAR90883.1
    • galE
    		 1204 - 2223 (+) UDP-glucose C4-epimerase
      copy AA seq
      copy Nt seq
      • AAR90884.1
      • wbiN
      		 2242 - 3258 (+) putative glycosyltransferase
        copy AA seq
        copy Nt seq
        • AAR90885.1
        • gmd
        		 3285 - 4406 (+) GDP-mannose 4,6-dehydratase
          copy AA seq
          copy Nt seq
          • AAR90886.1
          • fcl
          		 4409 - 5266 (+) GDP-fucose synthetase
            copy AA seq
            copy Nt seq
            • AAR90887.1
            • gmm
            		 5382 - 5882 (+) GDP-mannose mannosyl hydrolase
              copy AA seq
              copy Nt seq
              • AAR90888.1
              • manC
              		 5875 - 7323 (+) GDP-mannose pyrophosphorylase
                copy AA seq
                copy Nt seq
                • AAR90889.1
                • manB
                		 7327 - 8700 (+) phosphomannomutase
                  copy AA seq
                  copy Nt seq
                  • AAR90890.1
                  • wzx
                  		 8712 - 9983 (+) O-antigen flippase
                    copy AA seq
                    copy Nt seq
                    • AAR90891.1
                    • wbiO
                    		 10232 - 10633 (+) putative O-acetyltransferase
                      copy AA seq
                      copy Nt seq
                      • AAR90892.1
                      • wzy
                      		 10641 - 11807 (+) O-antigen polymerase
                        copy AA seq
                        copy Nt seq
                        • AAR90893.1
                        • wbiP
                        		 11808 - 12545 (+) putative glycosyltransferase
                          copy AA seq
                          copy Nt seq
                          • AAR90894.1
                          • wbiQ
                          		 12553 - 13452 (+) putative fucosyltransferase
                            copy AA seq
                            copy Nt seq
                            Biosynthesis information
                            Annotation changelog

                            Entry version: 2

                            Date
                            Changes
                            Submitters
                            Reviewers
                            2019-10-16
                            Migrated from v1.4
                            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                            2019-10-16
                            Updated reference publication(s) (MIBiG Annotathon)
                            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

                            Entry version: 1

                            Date
                            Changes
                            Submitters
                            Reviewers
                            2015-06-12
                            Submitted
                            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                            Similar known gene clusters from MIBiG 4.0
                            Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
                            Click on reference genes to show details of similarities to genes within the current region.
                            Click on an accession to open that entry in the MiBIG database.