BGC0000788: O-antigen biosynthetic gene cluster from Salmonella enterica subsp. salamae serovar Greenside
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 1 - 21,532 nt. (total: 21,532 nt).
This entry is originally from NCBI GenBank AY730594.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
Biosynthesis
History
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0000788
Short description O-antigen biosynthetic gene cluster from Salmonella enterica subsp. salamae serovar Greenside
Status Quality: questionable
The quality level of this entry.

Status: active
The status of this entry.

Completeness: unknown
Whether the entry covers everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • saccharide (None)
Loci
AY730594.1
via
Compounds
  • O-antigen
Species Salmonella enterica subsp. salamae serovar Greenside [taxonomy]
References
Chemical products information
O-antigen Evidence:
(no structure information available)
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • AAV34516.1
  • gne
 205 - 1200 (+) UDP-GlcNAc 4-epimerase
    copy AA seq
    copy Nt seq
    • AAV34517.1
    • galF
    		 1443 - 2336 (+) UDP-glucose pyrophosporylase
      copy AA seq
      copy Nt seq
      • AAV34518.1
      • wbdM
      		 2732 - 3847 (+) glycosyltransferase
        copy AA seq
        copy Nt seq
        • AAV34519.1
        • gmd
        		 3869 - 4987 (+) GDP-mannose dehydratase
          copy AA seq
          copy Nt seq
          • AAV34520.1
          • fcl
          		 5187 - 5903 (+) fucose synthetase
            copy AA seq
            copy Nt seq
            • AAV34521.1
            • gmm
            		 5906 - 6406 (+) GDP-mannose mannosylhydrolase
              copy AA seq
              copy Nt seq
              • AAG41692.2
              • manC
              		 6399 - 7847 (+) mannose-1-P guanosyltransferase
                copy AA seq
                copy Nt seq
                • AAG41691.1
                • manB
                		 7851 - 9233 (+) phosphomannomutase
                  copy AA seq
                  copy Nt seq
                  • AAV34522.1
                  • wbdN
                  		 9230 - 10096 (+) glycosyltransferase
                    copy AA seq
                    copy Nt seq
                    • AAV34523.1
                    • wzy
                    		 10108 - 11085 (+) O-antigen polymerase
                      copy AA seq
                      copy Nt seq
                      • AAV34524.1
                      • wzx
                      		 11106 - 12377 (+) O-antigen flippase
                        copy AA seq
                        copy Nt seq
                        • AAV34525.1
                        • wbdO
                        		 12371 - 13165 (+) glycosyltransferase
                          copy AA seq
                          copy Nt seq
                          • AAV34526.1
                          • wbdP
                          		 13368 - 13931 (+) glycosyltransferase
                            copy AA seq
                            copy Nt seq
                            • AAV34527.1
                            • gnd
                            		 14004 - 15410 (+) 6-phosphogluconate dehydrogenase
                              copy AA seq
                              copy Nt seq
                              • AAV34528.1
                              • col1
                              		 15527 - 16450 (+) putative GDP-colitose biosynthetic protein
                                copy AA seq
                                copy Nt seq
                                • AAV34529.1
                                • col2
                                		 16447 - 17613 (+) putative GDP-colitose biosynthetic protein
                                  copy AA seq
                                  copy Nt seq
                                  • AAV34530.1
                                  • ugd
                                  		 18691 - 19857 (+) UDP-glucose-6-dehydrogenase
                                    copy AA seq
                                    copy Nt seq
                                    • AAV34531.1
                                    • wzz
                                    		 20000 - 20872 (+) O-antigen chain length determinant
                                      copy AA seq
                                      copy Nt seq
                                      • AAV34532.1
                                      • hisI
                                      		 21086 - 21355 (+) phosphoribosyl-AMP cyclohydrolase
                                        copy AA seq
                                        copy Nt seq
                                        Biosynthesis information
                                        Annotation changelog

                                        Entry version: 2

                                        Date
                                        Changes
                                        Submitters
                                        Reviewers
                                        2019-10-16
                                        Migrated from v1.4
                                        • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                        • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

                                        Entry version: 1

                                        Date
                                        Changes
                                        Submitters
                                        Reviewers
                                        2015-06-12
                                        Submitted
                                        • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                        • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                        Similar known gene clusters from MIBiG 4.0
                                        Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
                                        Click on reference genes to show details of similarities to genes within the current region.
                                        Click on an accession to open that entry in the MiBIG database.