BGC0000863 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0000863 (Pseudoalteromonas sp. DS-12)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	PUFA,hglE-KS	1	17,116	eicosapentaenoic acid	other:other	100%

BGC0000863 - Region 1 - PUFA,hglE-KS

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Location: 1 - 17,116 nt. (total: 17,116 nt) Show pHMM detection rules used

Region on contig edge.

PUFA: PUFA_KS
hglE-KS: (hglE or hglD)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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Gene overview

MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

External annotation

Name		MIBiG
Version		4.0alpha

Type		Subregion
Location		1 - 17,117
Label		BGC0000863

Detailed domain annotation

Selected features only

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000863	2.00	Other	eicosapentaenoic acid	Pseudoalteromonas sp. DS-12
BGC0002429	0.50	Terpene, Polyketide	higginsianin B	Colletotrichum higginsianum IMI 349063
BGC0000284	0.48	Polyketide	phenolic lipids	Azotobacter vinelandii DJ
BGC0000862	0.42	Other	eicosapentaenoic acid	Shewanella pneumatophori
BGC0001872	0.41	Polyketide	fabclavine-polyamine	Xenorhabdus bovienii SS-2004
BGC0000861	0.41	Other	eicosapentaenoic acid	Shewanella sp. BR-2
BGC0002648	0.41	Polyketide	eicosapentaenoic acid	Shewanella sp. N2AIL
BGC0000869	0.39	Other	heterocyst glycolipids	Nostoc sp. 'Peltigera membranacea cyanobiont'
BGC0000864	0.34	Other	eicosapentaenoic acid-like compound	Moritella marina ATCC 15381
BGC0000107	0.34	Polyketide	naphthopyrone	Aspergillus nidulans FGSC A4

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000863	1.00	Other	eicosapentaenoic acid	Pseudoalteromonas sp. DS-12
BGC0002429	0.58	Terpene, Polyketide	higginsianin B	Colletotrichum higginsianum IMI 349063
BGC0000284	0.57	Polyketide	phenolic lipids	Azotobacter vinelandii DJ
BGC0000862	0.54	Other	eicosapentaenoic acid	Shewanella pneumatophori
BGC0001872	0.53	Polyketide	fabclavine-polyamine	Xenorhabdus bovienii SS-2004
BGC0000861	0.53	Other	eicosapentaenoic acid	Shewanella sp. BR-2
BGC0002648	0.53	Polyketide	eicosapentaenoic acid	Shewanella sp. N2AIL
BGC0000869	0.52	Other	heterocyst glycolipids	Nostoc sp. 'Peltigera membranacea cyanobiont'
BGC0000864	0.48	Other	eicosapentaenoic acid-like compound	Moritella marina ATCC 15381
BGC0000107	0.48	Polyketide	naphthopyrone	Aspergillus nidulans FGSC A4

Similar known gene clusters from MIBiG 4.0

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 17116:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

pfaA

PKS_AT (608..916): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 66.7%; inactive: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 80.3
inactive: 41.6
Methoxymalonyl-CoA: 29.0
Methylmalonyl-CoA: 26.1
fatty_acid: 12.8
trans-1,2-CPDA: 0.0
Propionyl-CoA: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0