BGC0000932: tropodithietic acid biosynthetic gene cluster from Phaeobacter inhibens DSM 17395
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Location: 88,772 - 108,389 nt. (total: 19,618 nt).
This entry is originally from NCBI GenBank CP002977.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
History
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0000932
Short description tropodithietic acid biosynthetic gene cluster from Phaeobacter inhibens DSM 17395
Status Minimal annotation: yes
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: Unknown
Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • Other
Loci NCBI GenBank: CP002977.1
Compounds
  • tropodithietic acid
  • hydroxytropodithietic acid
Species Phaeobacter inhibens DSM 17395 [taxonomy]
References
Chemical products information
tropodithietic acid
Copy SMILES
C8H4O3S2
Chemical database entries
PubCHEM
hydroxytropodithietic acid
Copy SMILES
C8H4O4S2
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • PGA1_262p00800
  • AFO93362.1
  • paaZ
88772 - 90904 (+) phenylacetic acid degradation protein PaaZ
copy AA seq
copy Nt seq
  • PGA1_262p00810
  • AFO93363.1
  • tdaF
90939 - 91508 (+) putative flavoprotein, HFCD family
copy AA seq
copy Nt seq
  • PGA1_262p00820
  • AFO93364.1
91588 - 92028 (-) hypothetical protein
copy AA seq
copy Nt seq
  • PGA1_262p00830
  • AFO93365.1
92033 - 93094 (-) hypothetical protein
copy AA seq
copy Nt seq
  • PGA1_262p00840
  • AFO93366.1
93186 - 94511 (-) hypothetical protein
copy AA seq
copy Nt seq
  • PGA1_262p00850
  • AFO93367.1
94642 - 96099 (-) putative sodium dependent symporter
copy AA seq
copy Nt seq
  • PGA1_262p00860
  • AFO93368.1
96397 - 96855 (+) hypothetical protein
copy AA seq
copy Nt seq
  • PGA1_262p00870
  • AFO93369.1
96898 - 98499 (+) ABC transporter, extracellular solute-binding protein
copy AA seq
copy Nt seq
  • PGA1_262p00880
  • AFO93370.1
98504 - 99547 (+) ABC transporter, integral inner membrane component
copy AA seq
copy Nt seq
  • PGA1_262p00890
  • AFO93371.1
99548 - 100357 (+) ABC transporter, integral inner membrane component
copy AA seq
copy Nt seq
  • PGA1_262p00900
  • AFO93372.1
100354 - 101850 (+) ABC transporter, ATP-binding protein
copy AA seq
copy Nt seq
  • PGA1_262p00910
  • AFO93373.1
101847 - 102404 (-) putative cation transort protein
copy AA seq
copy Nt seq
  • PGA1_262p00920
  • AFO93374.1
102488 - 103174 (-) conserved hypothetical protein, peptidase M23-like protein
copy AA seq
copy Nt seq
  • PGA1_262p00930
  • AFO93375.1
103171 - 103752 (-) hypothetical protein
copy AA seq
copy Nt seq
  • PGA1_262p00940
  • AFO93376.1
  • tdaE
103793 - 104986 (-) acyl-CoA dehydrogenase TdaE
copy AA seq
copy Nt seq
  • PGA1_262p00950
  • AFO93377.1
  • tdaD
105010 - 105426 (-) thioesterase superfamily protein TdaD
copy AA seq
copy Nt seq
  • PGA1_262p00960
  • AFO93378.1
  • tdaC
105464 - 106066 (-) prephenate dehydratase TdaC-like protein
copy AA seq
copy Nt seq
  • PGA1_262p00970
  • AFO93379.1
  • tdaB
106586 - 107284 (-) putative beta etherase TdaB
copy AA seq
copy Nt seq
  • PGA1_262p00980
  • AFO93380.1
  • tdaA
107499 - 108389 (-) transcriptional regulator, LysR family
copy AA seq
copy Nt seq
Annotation changelog
MIBiG version Submitter Notes
1.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Submitted
2.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Migrated from v1.4
3.0
  • Hidden contributor (ID: 5UL74VURKJ25VSPPPO3H2NYB, no GDPR consent given).
  • Hidden contributor (ID: FXGHY3FQ6PUVIIQ6EB3CJFGW, no GDPR consent given).
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Add new compound structure (SMILES) for tropodithietic acid
  • Linked new PubChem id for tropodithietic acid (pubchem:44632924)
  • Add new compound: hydroxytropodithietic acid
  • Merged annotations from duplicate entry BGC0001362
  • Updated bioactivity data
3.1
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Update chemical activity to schema version 2.11
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.