BGC0000997: glidobactin biosynthetic gene cluster from [Polyangium] brachysporum
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 1 - 36,000 nt. (total: 36,000 nt).
This entry is originally from NCBI GenBank AM412319.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
History
NRPS/PKS domains
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0000997
Short description glidobactin biosynthetic gene cluster from [Polyangium] brachysporum
Status Minimal annotation: yes
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: Unknown
Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • NRP
  • Polyketide
Loci NCBI GenBank: AM412319.1
Compounds
  • glidobactin
  • glidobactin B
  • glidobactin C
Species [Polyangium] brachysporum [taxonomy]
References
Chemical products information
glidobactin
Copy SMILES
C27H44N4O6
Chemical database entries
PubCHEM
PubCHEM
glidobactin B
Copy SMILES
C29H46N4O6
glidobactin C
Copy SMILES
C29H48N4O6
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • CAL80814.1
  • hutU
 237 - 1925 (+) urocanase
copy AA seq
copy Nt seq
  • CAL80815.1
  • hutH
 1922 - 3469 (+) histidine ammonia-lyase
copy AA seq
copy Nt seq
  • CAL80816.1
  • hutG
 3466 - 4422 (+) formiminoglutamase
copy AA seq
copy Nt seq
  • CAL80817.1
  • hutI
 4419 - 5645 (+) imidazolonepropionase
copy AA seq
copy Nt seq
  • CAL80818.1
 5753 - 7873 (+) two-component hybrid sensor/regulator
copy AA seq
copy Nt seq
  • CAL80819.1
  • glbA
 8226 - 9239 (+) LysR-type regulator
copy AA seq
copy Nt seq
  • CAL80820.1
  • glbB
 9628 - 10488 (+) conserved protein
copy AA seq
copy Nt seq
  • CAL80821.1
  • glbC
 10523 - 23068 (+) sylD-like NRPS/PKS
copy AA seq
copy Nt seq
  • CAL80822.1
  • glbD
 23065 - 24375 (+) major facilitator superfamily transporter
copy AA seq
copy Nt seq
  • CAL80823.1
  • glbE
 24359 - 24580 (+) MbtH-like protein
copy AA seq
copy Nt seq
  • CAL80824.1
  • glbF
 24585 - 27836 (+) NRPS module protein
copy AA seq
copy Nt seq
  • CAL80825.1
  • glbG
 27874 - 28239 (+) ketosteroid isomerase-related protein
copy AA seq
copy Nt seq
  • CAL80826.1
  • glbH
 28303 - 29721 (+) 2-nitrodioxygenase-like
copy AA seq
copy Nt seq
  • CAL80827.1
 29822 - 30856 (+) LysR:LysR substrate binding domain
copy AA seq
copy Nt seq
  • CAL80828.1
 31719 - 32009 (+) conserved hypothetical protein
copy AA seq
copy Nt seq
  • CAL80829.1
 32040 - 32759 (-) hypothetical protein
copy AA seq
copy Nt seq
  • CAL80830.1
 32975 - 33811 (+) dehydrogenase-related protein
copy AA seq
copy Nt seq
  • CAL80831.1
  • pacC
 34037 - 34549 (+) carboxymuconolactone decarboxylase
copy AA seq
copy Nt seq
  • CAL80832.1
 34537 - 35505 (-) HTH AraC-type regulator
copy AA seq
copy Nt seq
Annotation changelog
MIBiG version Submitter Notes
1.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Submitted
2.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Migrated from v1.4
3.0
  • Hidden contributor (ID: 5UL74VURKJ25VSPPPO3H2NYB, no GDPR consent given).
  • Update compound structure (SMILES) for glidobactin
  • Linked new PubChem id for glidobactin (pubchem:6505332)
  • Add new compound: glidobactin B
  • Add new compound: glidobactin C
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.