rapB: mal - mmal - mmal - mal - mal - mmal
PKS_AT (543..799): mal
ATSignature: Malonyl-CoA
- Top 3 matches:
- Malonyl-CoA: 87.5%
- inactive: 70.8%
- Methylmalonyl-CoA: 54.2%
minowa: Malonyl-CoA
- Prediction, score:
-
- Malonyl-CoA: 151.3
- Methoxymalonyl-CoA: 63.6
- inactive: 62.9
- Methylmalonyl-CoA: 40.5
- Isobutyryl-CoA: 20.4
- Acetyl-CoA: 19.1
- fatty_acid: 16.9
- Propionyl-CoA: 16.9
- Ethylmalonyl-CoA: 15.8
- CHC-CoA: 14.3
- Benzoyl-CoA: 10.6
- 2-Methylbutyryl-CoA: 9.8
- trans-1,2-CPDA: 0.0
- 3-Methylbutyryl-CoA: 0.0
PKS_AT (2136..2409): mmal
ATSignature: Methylmalonyl-CoA
- Top 3 matches:
- Methylmalonyl-CoA: 100.0%
- Methoxymalonyl-CoA: 95.8%
- Ethylmalonyl-CoA: 91.7%
minowa: Methylmalonyl-CoA
- Prediction, score:
-
- Methylmalonyl-CoA: 183.0
- Ethylmalonyl-CoA: 170.3
- Methoxymalonyl-CoA: 144.3
- 2-Methylbutyryl-CoA: 89.1
- trans-1,2-CPDA: 88.6
- Propionyl-CoA: 81.6
- CHC-CoA: 75.8
- Malonyl-CoA: 68.2
- Isobutyryl-CoA: 50.1
- Benzoyl-CoA: 39.6
- Acetyl-CoA: 21.8
- 3-Methylbutyryl-CoA: 13.9
- inactive: 11.6
- fatty_acid: 8.6
PKS_AT (3779..4052): mmal
ATSignature: Methylmalonyl-CoA
- Top 3 matches:
- Methylmalonyl-CoA: 100.0%
- Methoxymalonyl-CoA: 95.8%
- Ethylmalonyl-CoA: 91.7%
minowa: Methylmalonyl-CoA
- Prediction, score:
-
- Methylmalonyl-CoA: 180.0
- Ethylmalonyl-CoA: 171.1
- Methoxymalonyl-CoA: 137.5
- 2-Methylbutyryl-CoA: 98.8
- Propionyl-CoA: 89.8
- trans-1,2-CPDA: 84.5
- CHC-CoA: 73.9
- Malonyl-CoA: 67.6
- Isobutyryl-CoA: 41.6
- Benzoyl-CoA: 36.4
- Acetyl-CoA: 25.3
- fatty_acid: 14.3
- 3-Methylbutyryl-CoA: 10.2
- inactive: 9.4
PKS_AT (5757..6017): mal
ATSignature: Malonyl-CoA
- Top 3 matches:
- Malonyl-CoA: 87.5%
- inactive: 70.8%
- Methylmalonyl-CoA: 54.2%
minowa: Malonyl-CoA
- Prediction, score:
-
- Malonyl-CoA: 151.9
- Methoxymalonyl-CoA: 64.1
- inactive: 62.9
- Methylmalonyl-CoA: 43.3
- Isobutyryl-CoA: 21.0
- Acetyl-CoA: 18.7
- Propionyl-CoA: 18.0
- fatty_acid: 17.1
- Ethylmalonyl-CoA: 15.4
- CHC-CoA: 14.8
- Benzoyl-CoA: 10.2
- 2-Methylbutyryl-CoA: 9.8
- trans-1,2-CPDA: 0.0
- 3-Methylbutyryl-CoA: 0.0
PKS_AT (7383..7638): mal
ATSignature: Malonyl-CoA
- Top 3 matches:
- Malonyl-CoA: 87.5%
- inactive: 70.8%
- Methylmalonyl-CoA: 54.2%
minowa: Malonyl-CoA
- Prediction, score:
-
- Malonyl-CoA: 150.0
- inactive: 70.2
- Methoxymalonyl-CoA: 63.9
- Methylmalonyl-CoA: 44.1
- Isobutyryl-CoA: 23.1
- Propionyl-CoA: 17.9
- Acetyl-CoA: 16.7
- fatty_acid: 15.2
- CHC-CoA: 13.1
- Ethylmalonyl-CoA: 12.6
- Benzoyl-CoA: 8.2
- 2-Methylbutyryl-CoA: 0.8
- trans-1,2-CPDA: 0.0
- 3-Methylbutyryl-CoA: 0.0
PKS_AT (9013..9285): mmal
ATSignature: Methylmalonyl-CoA
- Top 3 matches:
- Methylmalonyl-CoA: 100.0%
- Methoxymalonyl-CoA: 95.8%
- Ethylmalonyl-CoA: 91.7%
minowa: Methylmalonyl-CoA
- Prediction, score:
-
- Methylmalonyl-CoA: 179.3
- Ethylmalonyl-CoA: 165.6
- Methoxymalonyl-CoA: 143.3
- 2-Methylbutyryl-CoA: 90.5
- trans-1,2-CPDA: 86.6
- Propionyl-CoA: 85.2
- CHC-CoA: 77.0
- Malonyl-CoA: 62.9
- Isobutyryl-CoA: 43.6
- Benzoyl-CoA: 37.1
- Acetyl-CoA: 30.5
- 3-Methylbutyryl-CoA: 13.2
- inactive: 10.4
- fatty_acid: 8.8
rapA: shikimic_acid - mmal - mal - mmal - mmal
CAL_domain (34..439): shikimic_acid
minowa: shikimic_acid
- Prediction, score:
-
- shikimic_acid: 584.8
- AHBA: 289.8
- fatty_acid: 0.0
- NH2: 0.0
- Acetyl-CoA: 0.0
PKS_AT (1818..2091): mmal
ATSignature: Methylmalonyl-CoA
- Top 3 matches:
- Methylmalonyl-CoA: 100.0%
- Methoxymalonyl-CoA: 95.8%
- Ethylmalonyl-CoA: 91.7%
minowa: Methylmalonyl-CoA
- Prediction, score:
-
- Methylmalonyl-CoA: 184.1
- Ethylmalonyl-CoA: 176.5
- Methoxymalonyl-CoA: 141.7
- 2-Methylbutyryl-CoA: 97.7
- Propionyl-CoA: 90.2
- trans-1,2-CPDA: 82.6
- CHC-CoA: 76.7
- Malonyl-CoA: 69.9
- Isobutyryl-CoA: 53.4
- Benzoyl-CoA: 44.3
- Acetyl-CoA: 30.3
- fatty_acid: 21.6
- 3-Methylbutyryl-CoA: 20.2
- inactive: 12.5
PKS_AT (3796..4056): mal
ATSignature: Malonyl-CoA
- Top 3 matches:
- Malonyl-CoA: 87.5%
- inactive: 70.8%
- Methylmalonyl-CoA: 54.2%
minowa: Malonyl-CoA
- Prediction, score:
-
- Malonyl-CoA: 149.8
- inactive: 65.9
- Methoxymalonyl-CoA: 64.0
- Methylmalonyl-CoA: 44.7
- Isobutyryl-CoA: 25.0
- Propionyl-CoA: 18.8
- Acetyl-CoA: 18.7
- fatty_acid: 17.1
- CHC-CoA: 14.8
- Ethylmalonyl-CoA: 12.9
- Benzoyl-CoA: 10.0
- 2-Methylbutyryl-CoA: 2.0
- trans-1,2-CPDA: 0.0
- 3-Methylbutyryl-CoA: 0.0
PKS_AT (5387..5659): mmal
ATSignature: Methylmalonyl-CoA
- Top 3 matches:
- Methylmalonyl-CoA: 100.0%
- Methoxymalonyl-CoA: 95.8%
- Ethylmalonyl-CoA: 91.7%
minowa: Methylmalonyl-CoA
- Prediction, score:
-
- Methylmalonyl-CoA: 187.3
- Ethylmalonyl-CoA: 174.0
- Methoxymalonyl-CoA: 146.8
- 2-Methylbutyryl-CoA: 99.8
- Propionyl-CoA: 90.1
- trans-1,2-CPDA: 87.1
- CHC-CoA: 80.5
- Malonyl-CoA: 75.9
- Isobutyryl-CoA: 46.9
- Benzoyl-CoA: 40.5
- Acetyl-CoA: 22.5
- 3-Methylbutyryl-CoA: 15.2
- inactive: 10.2
- fatty_acid: 9.5
PKS_AT (7363..7636): mmal
ATSignature: Methylmalonyl-CoA
- Top 3 matches:
- Methylmalonyl-CoA: 100.0%
- Methoxymalonyl-CoA: 95.8%
- Ethylmalonyl-CoA: 91.7%
minowa: Methylmalonyl-CoA
- Prediction, score:
-
- Methylmalonyl-CoA: 186.2
- Ethylmalonyl-CoA: 174.8
- Methoxymalonyl-CoA: 144.4
- 2-Methylbutyryl-CoA: 95.2
- Propionyl-CoA: 88.9
- trans-1,2-CPDA: 87.9
- CHC-CoA: 79.1
- Malonyl-CoA: 70.1
- Isobutyryl-CoA: 49.1
- Benzoyl-CoA: 40.1
- Acetyl-CoA: 24.1
- 3-Methylbutyryl-CoA: 15.7
- fatty_acid: 12.6
- inactive: 10.1
rapP: Hpr
AMP-binding (501..898): Hpr
nrpys: Hpr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Cyclic aliphatic chain (polar NH2 group) (Pro, Hpr)
- Small clusters prediction:
- N/A
- Single AA prediction:
- pip (Hpr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DYQYLGHLVK
- Nearest Stachelhaus code(s):
- Hpr DYQYLGHLVK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
rapC: mal - mal - mmal - mal
PKS_AT (545..801): mal
ATSignature: Malonyl-CoA
- Top 3 matches:
- Malonyl-CoA: 87.5%
- inactive: 70.8%
- Methylmalonyl-CoA: 54.2%
minowa: Malonyl-CoA
- Prediction, score:
-
- Malonyl-CoA: 158.6
- inactive: 66.3
- Methoxymalonyl-CoA: 65.2
- Methylmalonyl-CoA: 43.6
- Isobutyryl-CoA: 21.7
- Propionyl-CoA: 17.5
- Acetyl-CoA: 16.7
- fatty_acid: 15.9
- Ethylmalonyl-CoA: 15.8
- CHC-CoA: 13.3
- Benzoyl-CoA: 11.3
- 2-Methylbutyryl-CoA: 8.4
- trans-1,2-CPDA: 0.0
- 3-Methylbutyryl-CoA: 0.0
PKS_AT (2132..2387): mal
ATSignature: Malonyl-CoA
- Top 3 matches:
- Malonyl-CoA: 87.5%
- inactive: 70.8%
- Methylmalonyl-CoA: 54.2%
minowa: Malonyl-CoA
- Prediction, score:
-
- Malonyl-CoA: 157.9
- Methoxymalonyl-CoA: 67.5
- inactive: 64.5
- Methylmalonyl-CoA: 45.2
- Isobutyryl-CoA: 18.8
- Propionyl-CoA: 17.4
- Ethylmalonyl-CoA: 17.4
- Acetyl-CoA: 16.6
- fatty_acid: 15.9
- CHC-CoA: 13.4
- Benzoyl-CoA: 11.3
- 2-Methylbutyryl-CoA: 8.3
- trans-1,2-CPDA: 0.0
- 3-Methylbutyryl-CoA: 0.0
PKS_AT (3726..3999): mmal
ATSignature: Methylmalonyl-CoA
- Top 3 matches:
- Methylmalonyl-CoA: 100.0%
- Methoxymalonyl-CoA: 95.8%
- Ethylmalonyl-CoA: 91.7%
minowa: Methylmalonyl-CoA
- Prediction, score:
-
- Methylmalonyl-CoA: 187.4
- Ethylmalonyl-CoA: 171.6
- Methoxymalonyl-CoA: 148.3
- 2-Methylbutyryl-CoA: 94.7
- trans-1,2-CPDA: 94.4
- Propionyl-CoA: 88.1
- CHC-CoA: 74.5
- Malonyl-CoA: 72.6
- Isobutyryl-CoA: 46.6
- Benzoyl-CoA: 41.6
- Acetyl-CoA: 17.1
- 3-Methylbutyryl-CoA: 15.8
- inactive: 11.6
- fatty_acid: 9.8
PKS_AT (5760..6052): mal
ATSignature: Malonyl-CoA
- Top 3 matches:
- Malonyl-CoA: 100.0%
- inactive: 66.7%
- Propionyl-CoA: 54.2%
minowa: Malonyl-CoA
- Prediction, score:
-
- Malonyl-CoA: 153.8
- Methoxymalonyl-CoA: 62.3
- inactive: 56.2
- Methylmalonyl-CoA: 47.4
- Propionyl-CoA: 32.6
- Isobutyryl-CoA: 32.3
- fatty_acid: 22.8
- Ethylmalonyl-CoA: 17.7
- Benzoyl-CoA: 10.0
- Acetyl-CoA: 5.2
- trans-1,2-CPDA: 0.0
- CHC-CoA: 0.0
- 3-Methylbutyryl-CoA: 0.0
- 2-Methylbutyryl-CoA: -3.1
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