BGC0001051 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0001051 (Sorangium cellulosum)

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 1	T1PKS,NRPS	1	82,258	High	thuggacin A	NRPS:Type I+PKS:Type I

BGC0001051 - Region 1 - NRPS,T1PKS

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Location: 1 - 82,258 nt. (total: 82,258 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS: cds(Condensation and (AMP-binding or A-OX) and not alpha_am_amid)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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Gene overview

MIBiG

Tailoring

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

NRPS/PKS domains

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

External annotation

Name		MIBiG
Version		4.0alpha

Type		Subregion
Location		1 - 82,259
Label		BGC0001051

Tailoring functions

Oxidoreductases: dehydrogenase

tgaB: short-chain dehydrogenase/reductase SDR

smcogs: SMCOG1001: short-chain dehydrogenase/reductase SDR

tgaD: crotonyl-CoA reductase / alcohol dehydrogenase

smcogs: SMCOG1028: crotonyl-CoA reductase / alcohol dehydrogenase

Ligases: synthase

tgaA: Beta-ketoacyl synthase

smcogs: SMCOG1022: Beta-ketoacyl synthase

tgaC: Beta-ketoacyl synthase

smcogs: SMCOG1022: Beta-ketoacyl synthase

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001051.5	1.70	NRPS, PKS	thuggacin A	Sorangium cellulosum
BGC0001276.3	0.90	PKS	6-methylsalicyclic acid	Aspergillus terreus
BGC0001273.3	0.77	PKS	asperlactone	Aspergillus ochraceus
BGC0001244.3	0.76	PKS	(-)-Mellein	Parastagonospora nodorum
BGC0000041.3	0.64	PKS	oronofacic acid	Pseudomonas syringae
BGC0001342.3	0.62	NRPS, PKS	Cmc-thuggacin A, Cmc-thuggacin B	Chondromyces crocatus
BGC0001160.5	0.59	PKS	1-nonadecene, (14Z)-1,14-nonadecadiene	Synechococcus sp. PCC 7002
BGC0001164.3	0.58	PKS	1-heptadecene	Cyanothece sp. PCC 7822
BGC0000143.5	0.51	PKS	salinomycin	Streptomyces albus
BGC0000067.5	0.48	PKS	geldanamycin	Streptomyces hygroscopicus subsp. duamyceticus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001051.5	1.00	NRPS, PKS	thuggacin A	Sorangium cellulosum
BGC0001276.3	0.75	PKS	6-methylsalicyclic acid	Aspergillus terreus
BGC0001273.3	0.75	PKS	asperlactone	Aspergillus ochraceus
BGC0001244.3	0.75	PKS	(-)-Mellein	Parastagonospora nodorum
BGC0001342.3	0.68	NRPS, PKS	Cmc-thuggacin A, Cmc-thuggacin B	Chondromyces crocatus
BGC0000041.3	0.65	PKS	oronofacic acid	Pseudomonas syringae
BGC0001160.5	0.63	PKS	1-nonadecene, (14Z)-1,14-nonadecadiene	Synechococcus sp. PCC 7002
BGC0001164.3	0.63	PKS	1-heptadecene	Cyanothece sp. PCC 7822
BGC0000067.5	0.61	PKS	geldanamycin	Streptomyces hygroscopicus subsp. duamyceticus
BGC0000143.5	0.58	PKS	salinomycin	Streptomyces albus

Similar known clusters from MIBiG 4.0

Module view

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Detailed domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 82258:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pk - pk - ohmal - ohmal) + (Me-ohmal - ccmal) + (ohmal - Me-ohmal - Cys - ccemal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

tgaA: pk - mmal - pk - pk - mal - mal

PKS_AT (628..925): pk

ATSignature: Benzoyl-CoA

Top 3 matches:: Benzoyl-CoA: 83.3%; Methylmalonyl-CoA: 62.5%; Ethylmalonyl-CoA: 58.3%

minowa: Benzoyl-CoA

Prediction, score:

Benzoyl-CoA: 200.5
Isobutyryl-CoA: 131.6
Methylmalonyl-CoA: 115.0
Methoxymalonyl-CoA: 94.7
Ethylmalonyl-CoA: 87.3
Acetyl-CoA: 64.9
trans-1,2-CPDA: 61.5
Malonyl-CoA: 61.0
Propionyl-CoA: 54.6
2-Methylbutyryl-CoA: 54.4
CHC-CoA: 50.5
3-Methylbutyryl-CoA: 49.4
fatty_acid: 27.1
inactive: 19.4

PKS_AT (1058..1355): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 95.8%; Methoxymalonyl-CoA: 83.3%; Ethylmalonyl-CoA: 79.2%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 215.0
Ethylmalonyl-CoA: 209.7
Methoxymalonyl-CoA: 187.8
2-Methylbutyryl-CoA: 145.8
trans-1,2-CPDA: 135.1
Malonyl-CoA: 115.6
Propionyl-CoA: 114.2
CHC-CoA: 111.9
Isobutyryl-CoA: 98.6
Benzoyl-CoA: 76.9
Acetyl-CoA: 75.8
3-Methylbutyryl-CoA: 53.3
inactive: 43.9
fatty_acid: 42.9

PKS_AT (2875..3172): pk

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 95.8%; Methoxymalonyl-CoA: 87.5%; Ethylmalonyl-CoA: 83.3%

minowa: Ethylmalonyl-CoA

Prediction, score:

Ethylmalonyl-CoA: 214.1
Methylmalonyl-CoA: 213.3
Methoxymalonyl-CoA: 188.1
trans-1,2-CPDA: 141.5
2-Methylbutyryl-CoA: 139.7
Propionyl-CoA: 114.7
CHC-CoA: 106.3
Malonyl-CoA: 103.6
Isobutyryl-CoA: 89.4
Benzoyl-CoA: 68.7
Acetyl-CoA: 65.2
inactive: 44.1
3-Methylbutyryl-CoA: 40.8
fatty_acid: 28.9

PKS_AT (4229..4526): pk

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 95.8%; Methoxymalonyl-CoA: 87.5%; Ethylmalonyl-CoA: 83.3%

minowa: Ethylmalonyl-CoA

Prediction, score:

Ethylmalonyl-CoA: 214.1
Methylmalonyl-CoA: 213.3
Methoxymalonyl-CoA: 188.1
trans-1,2-CPDA: 141.5
2-Methylbutyryl-CoA: 139.7
Propionyl-CoA: 114.7
CHC-CoA: 106.3
Malonyl-CoA: 103.6
Isobutyryl-CoA: 89.4
Benzoyl-CoA: 68.7
Acetyl-CoA: 65.2
inactive: 44.1
3-Methylbutyryl-CoA: 40.8
fatty_acid: 28.9

PKS_AT (6005..6309): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 87.5%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 217.3
inactive: 116.7
Methoxymalonyl-CoA: 70.0
Methylmalonyl-CoA: 53.7
Propionyl-CoA: 34.5
Isobutyryl-CoA: 29.1
Ethylmalonyl-CoA: 25.5
Benzoyl-CoA: 19.5
2-Methylbutyryl-CoA: 19.1
Acetyl-CoA: 14.7
trans-1,2-CPDA: 9.2
fatty_acid: 8.2
CHC-CoA: 2.1
3-Methylbutyryl-CoA: 0.0

PKS_AT (7516..7829): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 83.3%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 219.3
inactive: 122.5
Methoxymalonyl-CoA: 67.0
Methylmalonyl-CoA: 50.3
Propionyl-CoA: 30.2
Isobutyryl-CoA: 28.2
Acetyl-CoA: 16.4
Benzoyl-CoA: 13.3
Ethylmalonyl-CoA: 10.2
2-Methylbutyryl-CoA: 8.3
fatty_acid: 6.0
CHC-CoA: 0.2
trans-1,2-CPDA: 0.0
3-Methylbutyryl-CoA: 0.0

tgaB: mmal - mal

PKS_AT (550..847): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 95.8%; Methoxymalonyl-CoA: 87.5%; Malonyl-CoA: 83.3%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 196.7
Ethylmalonyl-CoA: 183.2
Methoxymalonyl-CoA: 164.4
trans-1,2-CPDA: 122.5
2-Methylbutyryl-CoA: 119.7
Propionyl-CoA: 99.5
Malonyl-CoA: 92.4
CHC-CoA: 91.1
Isobutyryl-CoA: 85.2
Benzoyl-CoA: 49.9
Acetyl-CoA: 45.4
3-Methylbutyryl-CoA: 42.3
inactive: 33.1
fatty_acid: 25.4

PKS_AT (2099..2418): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 79.2%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 220.5
inactive: 122.0
Methoxymalonyl-CoA: 70.7
Methylmalonyl-CoA: 60.5
Propionyl-CoA: 35.8
Isobutyryl-CoA: 34.4
2-Methylbutyryl-CoA: 21.3
Acetyl-CoA: 21.1
Benzoyl-CoA: 19.3
Ethylmalonyl-CoA: 18.6
fatty_acid: 9.1
CHC-CoA: 3.5
trans-1,2-CPDA: 0.0
3-Methylbutyryl-CoA: 0.0

tgaC: mal - mmal - Cys - emal

Search NORINE for peptide: strict or relaxed

PKS_AT (546..864): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 87.5%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 225.6
inactive: 135.4
Methoxymalonyl-CoA: 63.5
Methylmalonyl-CoA: 52.6
Isobutyryl-CoA: 34.7
Propionyl-CoA: 32.1
2-Methylbutyryl-CoA: 18.8
Benzoyl-CoA: 18.0
Acetyl-CoA: 17.6
fatty_acid: 9.0
Ethylmalonyl-CoA: 8.2
trans-1,2-CPDA: 8.1
CHC-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

PKS_AT (2158..2455): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 95.8%; Ethylmalonyl-CoA: 91.7%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 215.3
Ethylmalonyl-CoA: 209.2
Methoxymalonyl-CoA: 188.0
2-Methylbutyryl-CoA: 150.8
trans-1,2-CPDA: 137.3
Malonyl-CoA: 119.5
Propionyl-CoA: 119.0
CHC-CoA: 114.8
Isobutyryl-CoA: 105.6
Benzoyl-CoA: 86.8
Acetyl-CoA: 74.1
3-Methylbutyryl-CoA: 58.9
fatty_acid: 49.5
inactive: 41.5

AMP-binding (3653..4054): Cys

nrpys: Cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Polar, uncharged (aliphatic with -SH) (Cys)
Small clusters prediction:: Polar, uncharged (aliphatic with -SH) (Cys)
Single AA prediction:: Polar, uncharged (aliphatic with -SH) (Cys)

Stachelhaus prediction details:

Stachelhaus sequence:: DLWNLSLIWK
Nearest Stachelhaus code(s):: Cys DLWNLSLIWK (100% 8Å match)
Stachelhaus code match:: 100% (strong)

PKS_AT (5133..5430): emal

ATSignature: Ethylmalonyl-CoA

Top 3 matches:: Ethylmalonyl-CoA: 83.3%; Methoxymalonyl-CoA: 79.2%; Methylmalonyl-CoA: 79.2%

minowa: Ethylmalonyl-CoA

Prediction, score:

Ethylmalonyl-CoA: 191.1
Methylmalonyl-CoA: 181.2
Methoxymalonyl-CoA: 164.2
trans-1,2-CPDA: 136.1
2-Methylbutyryl-CoA: 119.6
Isobutyryl-CoA: 89.7
Propionyl-CoA: 89.1
Malonyl-CoA: 87.0
CHC-CoA: 82.2
Benzoyl-CoA: 80.1
Acetyl-CoA: 50.8
3-Methylbutyryl-CoA: 39.9
fatty_acid: 33.7
inactive: 14.5

Link to PARAS substrate predictor