BGC0001110 - Region 1 - NRPS,PKS-like,prodigiosin,transAT-PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
More detailed help is available here.
Download region SVG
Location: 1 - 72,054 nt. (total: 72,054 nt)
Show pHMM detection rules used
Region on contig edge.
transAT-PKS: (cds(PKS_AT and not (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS)) and (cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS)) or cds(tra_KS and PP-binding)))
NRPS: cds(Condensation and (AMP-binding or A-OX) and not alpha_am_amid)
prodigiosin: (PPDK_N and AMP-binding and PP-binding and PKS_KS)
PKS-like: (t2pks2 or ksIII)
NRPS: cds(Condensation and (AMP-binding or A-OX) and not alpha_am_amid)
prodigiosin: (PPDK_N and AMP-binding and PP-binding and PKS_KS)
PKS-like: (t2pks2 or ksIII)
Legend:
reset view
zoom to selection