BGC0001131 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0001131 (Xenorhabdus miraniensis)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	NRPS	1	29,471	ambactin	NRPS:Type I	100%

BGC0001131 - Region 1 - NRPS

Download region GenBank file

Download region SVG

Location: 1 - 29,471 nt. (total: 29,471 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

External annotation

Name		MIBiG
Version		4.0alpha

Type		Subregion
Location		1 - 29,472
Label		BGC0001131

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001131	1.00	NRP	ambactin	Xenorhabdus miraniensis
BGC0001132	0.38	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001844	0.38	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0002135	0.37	NRP	bovienimide A	Xenorhabdus bovienii SS-2004
BGC0001758	0.37	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001128	0.36	NRP	gamexpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001135	0.36	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0002286	0.35	NRP	ririwpeptide A, ririwpeptide B, ririwpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001833	0.35	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0002518	0.35	NRP	syringafactin A, syringafactin C	Pseudomonas sp. SZ57

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001131	1.00	NRP	ambactin	Xenorhabdus miraniensis
BGC0001132	0.70	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001844	0.70	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0002135	0.69	NRP	bovienimide A	Xenorhabdus bovienii SS-2004
BGC0001758	0.69	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001128	0.69	NRP	gamexpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001135	0.69	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0002286	0.68	NRP	ririwpeptide A, ririwpeptide B, ririwpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001833	0.68	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0002518	0.68	NRP	syringafactin A, syringafactin C	Pseudomonas sp. SZ57

Similar known gene clusters from MIBiG 4.0

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 29471:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Ser - Gln - Phe - Leu - Phe - Lys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

Xmir_01407

Search NORINE for peptide: strict or relaxed

AMP-binding (437..841): Ser

nrpys: Ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
Small clusters prediction:: ser (Ser)
Single AA prediction:: ser (Ser)