BGC0001160: 1-nonadecene biosynthetic gene cluster from Synechococcus sp. PCC 7002
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 1,205,897 - 1,214,059 nt. (total: 8,163 nt).
This entry is originally from NCBI GenBank CP000951.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
Polyketide
History
NRPS/PKS domains
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0001160
Short description 1-nonadecene biosynthetic gene cluster from Synechococcus sp. PCC 7002
Status Minimal annotation: no
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: complete
Whether the loci encodes everything needed for the pathway producing the compound(s)
Remarks "The thioester release mechanism of this pathway involves a release via hydrolysis and decarboxylation which was not an option for this submission."
Biosynthetic class(es)
  • Polyketide (Other)
Loci NCBI GenBank: CP000951.1
Compounds
  • 1-nonadecene
  • (14Z)-1,14-nonadecadiene
Species Synechococcus sp. PCC 7002 [taxonomy]
References
Chemical products information
1-nonadecene [synonyms: nonadec-1-ene, nonadecene]
Copy SMILES
C19H38
Chemical database entries
PubCHEM
(14Z)-1,14-nonadecadiene
(no structure information available)
Chemical database entries
ChemSpider
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • SYNPCC7002_A1173
  • ACA99172.1
 1205897 - 1214059 (-) polyketide synthase
  • Activation / processing
Knock-out
copy AA seq
copy Nt seq
Polyketide-specific information
Subclass Other
Starter unit Malonyl-CoA
Cyclic? no
Polyketide-synthases
Genes Properties Modules
SYNPCC7002_A1173 Synthase subclass: Modular type I
Module 1
Specificity: Malonyl-CoA
Evidence for specificity: Structure-based inference
Genes: SYNPCC7002_A1173
Core domains: CoA-ligase, Thiolation (ACP/PCP), Ketosynthase, Acyltransferase, Ketoreductase, Thiolation (ACP/PCP), Sulfotransferase, Thioesterase
KR-domain stereochemistry: Unknown
Annotation changelog
MIBiG version Submitter Notes
1.0
  • Hidden contributor (ID: 7HHNU3LQRCEGVGBDFZYMEN7X, no GDPR consent given).
  • Submitted
2.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Migrated from v1.4
3.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Cleaned up synonym list
  • Corrected gene identifiers
  • Updated bioactivity data
3.1
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Update chemical activity to schema version 2.11
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.