LOCUS       BGC0001209              3513 bp    DNA     linear   BCT 28-JAN-2014
DEFINITION  Streptococcus thermophilus LMD-9, complete genome.
ACCESSION   BGC0001209
VERSION     BGC0001209
KEYWORDS    .
SOURCE      Streptococcus thermophilus LMD-9
  ORGANISM  Streptococcus thermophilus LMD-9
            Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
COMMENT     URL -- http://www.jgi.doe.gov
            JGI Project ID: 2662188
            Source DNA and bacteria available from Robert Hutkins
            (rhutkins1@unl.edu)
            Contacts: Robert Hutkins (rhutkins1@unl.edu)
            Paul Richardson (microbes@cuba.jgi-psf.org)
            Annotation done by Kira Makarova and Eugene Koonin
            Finishing done by Fidelity Systems Inc. (Gaithersburg)
            http://www.fidelitysystems.com
            Project Information available at:
            http://genome.jgi-psf.org/mic_home.html
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            ##antiSMASH-Data-START##
            Version      :: 6.2.0-924c3663(changed)
            Run date     :: 2022-11-07 23:59:41
            NOTE: This is a single region extracted from a larger record!
            Orig. start  :: 0
            Orig. end    :: 3513
            ##antiSMASH-Data-END##
FEATURES             Location/Qualifiers
     protocluster    1..3513
                     /aStool="rule-based-clusters"
                     /category="RiPP"
                     /contig_edge="True"
                     /core_location="[1088:3513]"
                     /cutoff="5000"
                     /detection_rule="(PF04055 and TIGR01716)"
                     /neighbourhood="10000"
                     /product="RaS-RiPP"
                     /protocluster_number="1"
                     /tool="antismash"
     proto_core      1089..3513
                     /aStool="rule-based-clusters"
                     /tool="antismash"
                     /cutoff="5000"
                     /detection_rule="(PF04055 and TIGR01716)"
                     /neighbourhood="10000"
                     /product="RaS-RiPP"
                     /protocluster_number="1"
     cand_cluster    1..3513
                     /candidate_cluster_number="1"
                     /contig_edge="True"
                     /detection_rules="(PF04055 and TIGR01716)"
                     /kind="single"
                     /product="RaS-RiPP"
                     /protoclusters="1"
                     /tool="antismash"
     subregion       1..3513
                     /aStool="externally annotated by: MIBiG"
                     /contig_edge="True"
                     /label="BGC0001209"
                     /subregion_number="1"
                     /tool="antismash"
     region          1..3513
                     /candidate_cluster_numbers="1"
                     /contig_edge="True"
                     /product="RaS-RiPP"
                     /region_number="1"
                     /rules="(PF04055 and TIGR01716)"
                     /subregion_numbers="1"
                     /tool="antismash"
     gene            complement(1..1092)
                     /locus_tag="STER_1355"
     CDS             complement(1..1092)
                     /codon_start=1
                     /locus_tag="STER_1355"
                     /product="Predicted transporter"
                     /protein_id="ABJ66528.1"
                     /transl_table=11
                     /translation="MSKKIFNLYGMNMFLSGLPYYFVGILLLKHLGFSFTEIATLSVIT
                     ELCGSVFDIPLSYISSKIGYKKILAISNLLLILALWGLLFGKSNIIYISAIFFGLSESL
                     SSGVLISYNFEIIDDEVVYKSFLKNLNTLKYIFIAIITIISPPLLHRNYIYPIIISIVF
                     VIFSLLYLIGLPEIKKEQNNKQKFFSLDNIQNIPWLLIILGVAFSTLIMISNSYAGIFL
                     NEQGLSLDMLGIILFMFNISMALGSYLKIKFEVSLMLPVLAILMFFQTNLIIQIIILLL
                     MRVLNSNYNNHFYYKFNMSIEKNRAVSWSVYNLFISISFMLADFLAGIFADNFSIRSNY
                     LIFGIVALCCLVSYSFSNREKRT"
     gene            complement(1089..2408)
                     /locus_tag="STER_1356"
                     /note="LactoCOG number LaCOG02718"
     CDS             complement(1089..2408)
                     /codon_start=1
                     /gene_functions="biosynthetic (rule-based-clusters)
                     RaS-RiPP: PF04055"
                     /gene_functions="biosynthetic-additional
                     (rule-based-clusters) Fer4_12"
                     /gene_functions="biosynthetic-additional
                     (rule-based-clusters) TIGR04085"
                     /gene_functions="biosynthetic-additional
                     (rule-based-clusters) Streptide_RRE"
                     /gene_kind="biosynthetic"
                     /locus_tag="STER_1356"
                     /product="Radical SAM superfamily enzyme"
                     /protein_id="ABJ66529.1"
                     /sec_met_domain="PF04055 (E-value: 3.2e-21, bitscore: 64.6,
                     seeds: 518, tool: rule-based-clusters)"
                     /sec_met_domain="Fer4_12 (E-value: 3.1e-08, bitscore: 22.2,
                     seeds: 84, tool: rule-based-clusters)"
                     /sec_met_domain="TIGR04085 (E-value: 9e-15, bitscore: 43.1,
                     seeds: 281, tool: rule-based-clusters)"
                     /sec_met_domain="Streptide_RRE (E-value: 6.4e-26, bitscore:
                     79.0, seeds: 8, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MMTISEDFLFRLEKFGGILINKVTFDRIELDESEAYFLYLVQNHG
                     FEIATSFFKKEIKAGKLERVLLLNIYSDNNIEGSSKNPDETLQNARKHVAKLKKHNILS
                     FPLELVIYPSMYCDLKCGFCFLANREDRNAKPAKDWERILRQAKDNGVLSVSILGGEPT
                     RYFDIDNLLIACEELKIKTTITTNAQLIKKSTVEILAKSKYITPVLSLQTLDPKLNFEL
                     MGVRPDRQIKLAKYFKEVGKKCRINAVYTKQSYEQIIELVDFCIENKIDRFSVANYSEV
                     TGYTKIKKKYDLADLRRLNEYVTDYITQREANLNFATEGCHLFTAYPELINNSIEFSEF
                     GEMYYGCRAKYTKMEIMSNGDILPCIAFLGVNQTKQNAFEKDLLDVWYDDPLYGGIRSF
                     RTKNSKCLSCGLLKICEGGCYVNLIKEKSPKYFRDPVCNL"
     gene            complement(2478..2570)
                     /locus_tag="STER_1357"
     CDS             complement(2478..2570)
                     /codon_start=1
                     /locus_tag="STER_1357"
                     /note="not curated"
                     /product="Predicted protein"
                     /protein_id="ABJ66530.1"
                     /transl_table=11
                     /translation="MSKELEKVLESSSMAKGDGWKVMAKGDGWE"
     gene            complement(2653..3513)
                     /locus_tag="STER_1358"
                     /note="LactoCOG number LaCOG00791"
     CDS             complement(2653..3513)
                     /codon_start=1
                     /gene_functions="biosynthetic (rule-based-clusters)
                     RaS-RiPP: TIGR01716"
                     /gene_kind="biosynthetic"
                     /locus_tag="STER_1358"
                     /product="Transcriptional regulator, xre family"
                     /protein_id="ABJ66531.1"
                     /sec_met_domain="TIGR01716 (E-value: 3.2e-52, bitscore:
                     165.4, seeds: 14, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MKKFGEIFKKFRESRGLRLKDVAKAGISTSQLSRFEKGETDLTIS
                     KFMFILDEINMPIDEFMYAVHDFHRDELNELLSKVRHFVSTRDVEGMKKLLYSQMELED
                     RREKFHQINIILLKIRLQDLSGETYYTKDDLTYLTDYLFSVEYWGYYELLIFSNTLDVL
                     NHDVFMVLAREMFRRSDFYKEIPNNRRLISTMLLNGYITCVEREKFMDALYFEKQLNQC
                     FFIETEVYERLVFKYAQNLYQYKEDGNVKAIIEMKKCVGAMKLAGSHHLAKTYEGHLEK
                     ILASS"
ORIGIN
        1 ttaagttctt ttctctctgt tagaaaatga ataagatact aagcaacaaa gagctactat
       61 accaaatatt aaataattgc tcctaatact aaagttatca gcaaaaatac cagctaggaa
      121 atcagctaac ataaaactaa tcgaaataaa caaattatat actgaccatg atactgctct
      181 atttttttct attgacatat taaatttata ataaaaatga ttattgtagt tggaattaag
      241 aacacgcatt aataaaagga ttataatttg gatgattaga ttagtttgaa aaaacatgag
      301 tatagctaat actggtaaca tcaagcttac ttcaaactta atttttagat aactccccaa
      361 agccatagat atattaaaca taaatagtat aattcccagc atatctagtg aaagtccctg
      421 ttcatttaag aatatccctg cataagaatt gctaatcata attagagttg agaatgctac
      481 tcctaatatt attaataacc atggaatatt ttgaatatta tcgaggctaa aaaatttttg
      541 tttattattt tgttcctttt taatctcggg taatcctatt aaatataata aactgaaaat
      601 tacaaataca atggatataa taataggata aatataattc ctatgcaata aaggtggaga
      661 tataatcgta ataatagcaa taaaaatata ttttaatgtg ttgagatttt tcaaaaatga
      721 tttatataca acttcgtcat caattatttc aaaattataa gaaataagaa ctcctgaaga
      781 taatgattct gacaatccaa aaaatatcgc tgaaatatat attatatttg attttccaaa
      841 caataggccc cataatgcta aaattaataa taaatttgaa atagccaaaa ttttcttgta
      901 accaatctta cttgaaatat aacttaaagg aatatcaaaa actgagccac atagctcagt
      961 aataactgat aaagtagcta tttctgtgaa cgaaaaacct aagtgcttta atagtaaaat
     1021 tcctacaaag tagtacggta atccagatag aaacatattc attccgtata aattaaaaat
     1081 cttcttactc ataagttaca aactgggtct ctaaaatatt ttggactctt ctccttaatc
     1141 aagttaacat agcagccacc ctcgcaaatt tttaacaatc cacaagataa acacttagaa
     1201 ttcttcgttc taaaagaacg aatccctcca tacaacggat catcatacca aacatctaac
     1261 aaatcttttt caaaggcatt ctgcttagtt tgattaactc ctaaaaaagc aatgcaaggc
     1321 aagatatccc cattagacat tatttccatc ttagtatatt ttgcacgaca tccataatac
     1381 atttcgccaa actctgaaaa ttcaattgaa ttatttatca actccggata agcggtgaaa
     1441 agatgacatc cctcagtagc aaaatttaaa ttagcttccc gttgagttat ataatctgta
     1501 acatactcat tcaaccttct caaatcagct aaatcgtatt ttttctttat tttcgtatat
     1561 cctgttacct cagaataatt agctactgaa aatctatcta ttttattctc tatacaaaaa
     1621 tcaaccaatt ctataatctg ctcatagctt tgctttgtat acactgcatt aattctacat
     1681 ttttttccaa cctctttaaa gtacttcgct aatttaattt gtctatcagg tctcaccccc
     1741 attaattcaa aatttaattt aggatctaaa gtctgcaaag ataaaaccgg tgtaatatat
     1801 ttagatttag ctagaatttc cactgtactt ttctttatta attgggcatt agttgttata
     1861 gtagtcttta tcttcagttc ttcacaagct atcaacaaat tatcaatatc aaaatatcta
     1921 gtcggttccc ctcctaaaat tgaaacactt aacactccat tatcttttgc ttggcgcaaa
     1981 attctttccc aatctttagc aggtttggca tttctatctt cacgatttgc taaaaaacaa
     2041 aaaccacatt ttaaatcaca gtacatactg gggtatatta ctagttcaag cggaaaactc
     2101 aatatgttat gtttttttaa ttttgctaca tgctttctcg cattttgaag agtctcgtca
     2161 ggatttttcg atgatccctc aatattatta tcagaataga tatttaataa gagtactcgc
     2221 tctagtttcc ctgcttttat ttctttctta aaaaaggacg tagcaatttc aaaaccatga
     2281 ttttgaacca aataaagaaa ataagcttca ctctcatcta actcaattcg gtcaaaagtt
     2341 actttattta tcaaaattcc accaaacttt tctagtctaa ataaaaaatc ttctgaaatt
     2401 gtcatcatat tgaatacctt tctaaaaaag cagaggaaaa tatagcctct gcttaactta
     2461 tgggataaat tactttatca ctcccagccg tcaccttttg ccatcacctt ccagccgtca
     2521 ccttttgcca ttgaactaga ctcaaggact ttttcaagct ctttagacat atttggtact
     2581 cctttcgaat atgatactgt gattatattt cttttcaaca cttacaataa aatattccca
     2641 tatttgcatt ttctaactac tagctaaaat tttttctaaa tgtccttcat aagtctttgc
     2701 taagtgatga cttcctgcta atttcatcgc tccaacacac ttcttcattt caataattgc
     2761 tttcacattt ccatcctctt tatattgata aagattttgt gcatacttaa agactaaacg
     2821 ttcatatact tctgtctcaa taaaaaagca ttgatttagc tgcttttcaa aatataaagc
     2881 atccataaat ttttctcttt caacacatgt aatatatcca tttaaaagca tcgttgaaat
     2941 taatcgtctg ttatttggaa tttctttgta aaaatcagaa cgcctaaaca tttctcttgc
     3001 taagaccatg aaaacatcat gatttaatac atctaaagta ttcgagaaaa tcaataactc
     3061 atagtacccc cagtattcta cactaaagag ataatctgtt aaatatgtca aatcatcctt
     3121 tgtatagtaa gtttctcctg ataaatcctg tagacgaatt ttcaataaaa taatattgat
     3181 ttgatgaaat ttttctcgcc tatcttccag ttccatctga gaataaagta attttttcat
     3241 accttctacg tcacgtgttg acacaaaatg acgtactttc gataacagtt cgtttaactc
     3301 atctctatga aaatcatgga ccgcatacat aaattcatct attggcatat tgatttcatc
     3361 taaaataaac atgaactttg aaatcgttaa atctgtttct cctttctcaa atcgagagag
     3421 ctgagacgtt gatataccag cctttgcgac gtcttttaat cgtaatcctc tcgattctcg
     3481 aaacttttta aaaatttctc caaatttttt cat
//
