BGC0001261 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0001261 (Alternaria alternata)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	NRPS	1	14,903	AM-toxin	NRPS:Type I	100%

BGC0001261 - Region 1 - NRPS

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Location: 1 - 14,903 nt. (total: 14,903 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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Gene overview

MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

External annotation

Name		MIBiG
Version		4.0alpha

Type		Subregion
Location		1 - 14,904
Label		BGC0001261

Detailed domain annotation

Selected features only

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001261	1.00	NRP	AM-toxin	Alternaria alternata
BGC0000900	0.32	Other	ferrichrome	Aspergillus oryzae
BGC0002518	0.27	NRP	syringafactin A, syringafactin C	Pseudomonas sp. SZ57
BGC0002286	0.27	NRP	ririwpeptide A, ririwpeptide B, ririwpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0002437	0.27	NRP	thermoactinoamide A	Thermoactinomyces sp. AS95
BGC0001135	0.27	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001128	0.26	NRP	gamexpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001166	0.26	NRP	HC-toxin	Alternaria jesenskae
BGC0001240	0.26	NRP	serinocyclin A, serinocyclin B	Metarhizium robertsii
BGC0000342	0.26	NRP	enniatin	Fusarium equiseti

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001261	1.00	NRP	AM-toxin	Alternaria alternata
BGC0000900	0.66	Other	ferrichrome	Aspergillus oryzae
BGC0002518	0.61	NRP	syringafactin A, syringafactin C	Pseudomonas sp. SZ57
BGC0002286	0.61	NRP	ririwpeptide A, ririwpeptide B, ririwpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0002437	0.60	NRP	thermoactinoamide A	Thermoactinomyces sp. AS95
BGC0001135	0.60	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001128	0.60	NRP	gamexpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001166	0.59	NRP	HC-toxin	Alternaria jesenskae
BGC0001240	0.59	NRP	serinocyclin A, serinocyclin B	Metarhizium robertsii
BGC0000342	0.59	NRP	enniatin	Fusarium equiseti

Similar known gene clusters from MIBiG 4.0

Module view

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 14903:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - Ala)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

AMT

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AMP-binding (276..677): X

nrpys: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DIFSIGGIGK
Nearest Stachelhaus code(s):: N6-ohLys or Lys DIESIGTIVK (59% 8Å match); Trp DPFSIGMIIK (53% 8Å match); Fo-OH-Orn DINYWGGIGK (50% 8Å match)
Stachelhaus code match:: 70% (weak)

AMP-binding (1366..1764): X

nrpys: Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALVVTGNIK
Nearest Stachelhaus code(s):: Phe or Trp DAFCVIGIIK (59% 8Å match); Leu DALVLAVSIK (56% 8Å match); D-Hiv GALHVVGSIK (53% 8Å match)
Stachelhaus code match:: 60% (weak)

AMP-binding (2444..2850): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: ala (Ala)

Stachelhaus prediction details:

Stachelhaus sequence:: DIFICACCLK
Nearest Stachelhaus code(s):: Ala DILICALICK (53% 8Å match)
Stachelhaus code match:: 60% (weak)