BGC0001324 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0001324 (Solanum pimpinellifolium (Lycopersicon pimpinellifolium))

Region	Type	From	To	Similarity Confidence	Most similar known cluster
Region 1	terpene	1	107,124	High	lycosantalonol/β-phellandrene	terpene

BGC0001324 - Region 1 - terpene

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Location: 1 - 107,124 nt. (total: 107,124 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (PT_phytoene_like or phytoene_synt or Lycopene_cycl or Lycopene_cycl_fung or T1TS or T1TS_KS or T2TS or TS_UbiA or TS_Pyr4)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

MIBiG

Tailoring

MIBiG comparison

KnownClusterBlast

Terpene

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

External annotation

Name		MIBiG
Version		4.0alpha

Type		Subregion
Location		1 - 107,125
Label		BGC0001324

Tailoring functions

Oxidoreductases: Cyclization oxygenase

AGK82811.1: Cyclization

MITE: MITE0000090Cyclization (identity: 97.20%)

AGK82814.1: Cyclization

MITE: MITE0000090Cyclization (identity: 68.40%)

AGK82815.1: Oxidation

MITE: MITE0000091Oxidation (identity: 95.10%)
smcogs: SMCOG1034: cytochrome P450

AGK82817.1: Oxidation

MITE: MITE0000091Oxidation (identity: 98.60%)
smcogs: SMCOG1034: cytochrome P450

AGK82818.1: Cyclization

MITE: MITE0000090Cyclization (identity: 87.00%)

AGK82819.1: Cyclization

MITE: MITE0000090Cyclization (identity: 85.40%)

Transferases: Prenylation

AGK82812.1: Prenylation

MITE: MITE0000089Prenylation (identity: 85.60%)

AGK82820.1: Prenylation

MITE: MITE0000089Prenylation (identity: 99.00%)

pseudo41887_42385: Prenylation

MITE: MITE0000089Prenylation (identity: 78.90%)

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001322.3	0.89	terpene	lycosantalonol, β-phellandrene	Solanum lycopersicum
BGC0002724.2	0.55	terpene	casbene	Jatropha curcas
BGC0000669.3	0.52	terpene	marneral	Arabidopsis thaliana
BGC0001321.3	0.52	terpene	monoterpenes-diterpenes	Solanum habrochaites
BGC0001317.3	0.50	terpene	lupeol	Lotus japonicus
BGC0000798.3	0.50	saccharide	dhurrin	Sorghum bicolor
BGC0002721.2	0.49	saccharide	α-hydroxynitrile glucoside, β-hydroxynitrile glucoside, γ-hydroxynitrile glucoside	Hordeum vulgare subsp. vulgare
BGC0000672.4	0.49	terpene	phytocassane, oryzalides	Oryza sativa Japonica Group
BGC0000670.4	0.47	terpene	thalianol, thaliandiol, thalianin	Arabidopsis thaliana
BGC0002394.2	0.47	terpene	taxa-4(5),11(12)-diene, taxa-4(20),11(12)-diene	Taxus chinensis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001322.3	0.89	terpene	lycosantalonol, β-phellandrene	Solanum lycopersicum
BGC0002724.2	0.57	terpene	casbene	Jatropha curcas
BGC0000669.3	0.54	terpene	marneral	Arabidopsis thaliana
BGC0000798.3	0.51	saccharide	dhurrin	Sorghum bicolor
BGC0002721.2	0.51	saccharide	α-hydroxynitrile glucoside, β-hydroxynitrile glucoside, γ-hydroxynitrile glucoside	Hordeum vulgare subsp. vulgare
BGC0000672.4	0.50	terpene	phytocassane, oryzalides	Oryza sativa Japonica Group
BGC0001317.3	0.50	terpene	lupeol	Lotus japonicus
BGC0000670.4	0.49	terpene	thalianol, thaliandiol, thalianin	Arabidopsis thaliana
BGC0002394.2	0.48	terpene	taxa-4(5),11(12)-diene, taxa-4(20),11(12)-diene	Taxus chinensis
BGC0001315.3	0.47	terpene	cucurbitacin C	Cucumis sativus

Similar known clusters from MIBiG 4.0

Detailed terpene predictions

Product predictions:

Class	Subclass	Product name	Chain length	Initial cyclisations	Functional groups
diterpene			C20	C6-C11 + C10-C15	PP

Genes with terpene domains:

AGK82811.1: T1TS

Domain 1 (476 - 713): Type 1 terpene synthase

Subtype: unknown

AGK82818.1: T1TS

Domain 1 (463 - 712): Type 1 terpene synthase

Subtype: unknown

AGK82819.1: T1TS

Domain 1 (463 - 712): Type 1 terpene synthase

Subtype: unknown

AGK82813.1: T2TS

Domain 1 (81 - 460): Type 2 terpene synthase

Subtype: Diterpene synthase

Reactions:: GGPP → diterpene_C6-C11/C10-C15_PP

AGK82814.1: T1TS

Domain 1 (453 - 711): Type 1 terpene synthase

Subtype: unknown

Terpene

Glossary

Acronym	Full name
GGPP	Geranylgeranyl diphosphate
PP	Diphosphate