BGC0001329: rakicidin D biosynthetic gene cluster from Streptomyces lilacinus
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Location: 1 - 36,804 nt. (total: 36,804 nt).
This entry is originally from NCBI GenBank KL569388.1, but has been modified (see Modifications tab for details).

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core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
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resistance
TTA codons
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Gene details
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General
Compounds
Genes
Polyketide
NRP
History
NRPS/PKS domains
KnownClusterBlast
Modifications
General information about the BGC
MIBiG accession BGC0001329
Short description rakicidin D biosynthetic gene cluster from Streptomyces lilacinus
Status Minimal annotation: no
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: incomplete
Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • NRP (Cyclic depsipeptide)
  • Polyketide (Macrolide)
Loci NCBI GenBank: KL569388.1
Compounds
  • rakicidin D
Species Streptomyces lilacinus [taxonomy]
References
Chemical products information
rakicidin D
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C24H38N4O7
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • ctg1_orf1
 1 - 4266 (+)
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  • ctg1_orf2
 4683 - 5000 (+)
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  • ctg1_orf3
 5002 - 9768 (+)
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  • ctg1_orf4
 9765 - 13544 (+)
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  • ctg1_orf5
 13541 - 18658 (+)
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  • ctg1_orf6
 18655 - 20118 (+)
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  • ctg1_orf7
 20273 - 20554 (+)
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  • ctg1_orf8
 21160 - 21891 (+)
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  • ctg1_orf9
 21812 - 22294 (+)
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  • ctg1_orf10
 22295 - 22858 (+)
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  • ctg1_orf11
 23821 - 25080 (+)
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  • ctg1_orf12
 25151 - 25687 (+)
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  • ctg1_orf13
 26697 - 30332 (+)
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  • ctg1_orf14
 30336 - 31595 (+)
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  • ctg1_orf15
 31606 - 31896 (+)
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  • ctg1_orf16
 31886 - 32641 (+)
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  • ctg1_orf17
 32631 - 34154 (+)
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  • ctg1_orf18
 34573 - 35775 (+)
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  • ctg1_orf19
 35809 - 36804 (+)
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Polyketide-specific information
Subclass Macrolide
Cyclic? yes
Release type
  • Macrolactonization
NRP-specific information
Subclass Cyclic depsipeptide
Cyclic? yes
Release type
  • Macrolactonization
Annotation changelog
MIBiG version Submitter Notes
1.4
  • Hidden contributor (ID: DPAKSDGGIIU3JRGIDNMS7RSG, no GDPR consent given).
  • Submitted
2.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Migrated from v1.4
  • Updated reference publication(s) (MIBiG Annotathon)
3.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Removed empty gene annotations
Detailed domain annotation
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Similar known gene clusters
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Modifications to original record
  • ctg1_orf1 was added
  • ctg1_orf2 was added
  • ctg1_orf3 was added
  • ctg1_orf4 was added
  • ctg1_orf5 was added
  • ctg1_orf6 was added
  • ctg1_orf7 was added
  • ctg1_orf8 was added
  • ctg1_orf9 was added
  • ctg1_orf10 was added
  • ctg1_orf11 was added
  • ctg1_orf12 was added
  • ctg1_orf13 was added
  • ctg1_orf14 was added
  • ctg1_orf15 was added
  • ctg1_orf16 was added
  • ctg1_orf17 was added
  • ctg1_orf18 was added
  • ctg1_orf19 was added