Genomic loci for this biosynthetic pathway

Cluster Type From To
The following clusters are from record BGC0001329.1:
Cluster 1NRP / Polyketide136804

BGC0001329, rakicidin D biosynthetic gene cluster from Streptomyces lilacinus. Locus 1. Full MIBiG entry.

Chemical compounds

Compound: Rakicidin D
SMILES string: Copy to clipboard
Molecular formula: C24H38N3O7
Exact molecular mass: 495.2813 Da ([M+H]+)
Molecular activity: Unknown

Class-specific details

Biosynthetic class(es):
NRP / Polyketide
Cyclic depsipeptide (cyclic)
Thioesterase type:
Unknown
Release / cyclization type:
Macrolactonization

Polyketide subclass:
Macrolide (cyclic)
Polyketide synthase subclass:
Modular type I
Starter unit:
Other
Thioesterase type:
Unknown
Release / cyclization type:
Macrolactonization

Gene cluster description

Download cluster GenBank file
rakicidin D (BGC0001329). Gene Cluster 1. Biosynthetic class = NRP/Polyketide. GenBank KL569388, positions 1-36804. Click on genes for more information.

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Domain annotation

Homologous known gene clusters

General MIBiG information on this cluster

Complete gene cluster sequence?incomplete
Evidence for cluster-compound connection:Gene expression correlated with compound production, Sequence-based prediction
MIxS-compliance:Unknown
Contact for this cluster:Thomas Torring (Aarhus University)

Literature references

1. Albright JC et al. (2014) Strain-specific proteogenomics accelerates the discovery of natural products via their biosynthetic pathways. J Ind Microbiol Biotechnol 41(2):451-9. doi: 10.1007/s10295-013-1373-4.