RSp0641: NH2 - mal - Thr - Tyr - Ser - X
CAL_domain (45..486): NH2
minowa: NH2
- Prediction, score:
-
- NH2: 125.2
- Acetyl-CoA: 40.0
- fatty_acid: 28.8
- AHBA: 8.4
- shikimic_acid: 0.0
PKS_AT (1229..1514): mal
ATSignature: Malonyl-CoA
- Top 3 matches:
- Malonyl-CoA: 91.7%
- inactive: 79.2%
- 2-Rhyd-Malonyl-CoA: 58.3%
minowa: Malonyl-CoA
- Prediction, score:
-
- Malonyl-CoA: 175.5
- inactive: 116.3
- Methoxymalonyl-CoA: 73.7
- Methylmalonyl-CoA: 58.2
- Propionyl-CoA: 43.1
- Ethylmalonyl-CoA: 32.2
- Isobutyryl-CoA: 25.8
- Benzoyl-CoA: 23.3
- 2-Methylbutyryl-CoA: 19.9
- CHC-CoA: 19.7
- fatty_acid: 19.2
- Acetyl-CoA: 17.1
- trans-1,2-CPDA: 13.4
- 3-Methylbutyryl-CoA: 5.6
AMP-binding (3156..3560): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4213..4603): Tyr
nrpys: Tyr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aromatic (Phe, Tyr, diOH-Bz, Ph-Gly, bOH-Tyr)
- Large clusters prediction:
- Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
- Small clusters prediction:
- Polar aromatic ring (Tyr, bOH-Tyr)
- Single AA prediction:
- tyr (Tyr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DASTIAAVCK
- Nearest Stachelhaus code(s):
- Tyr DASTIAAVCK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (5259..5657): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHLSLIDK
- Nearest Stachelhaus code(s):
- Ser DVWHLSLIDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (6311..6708): X
nrpys: Hse
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLKNVGSDVK
- Nearest Stachelhaus code(s):
- Hse DLKNVGSDVK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
RSp0642: Val - Ser - Gly - Ala - bAla
AMP-binding (566..962): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DALWMGGTFK
- Nearest Stachelhaus code(s):
- Val DALWMGGTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1624..2022): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHLSLIDK
- Nearest Stachelhaus code(s):
- Ser DVWHLSLIDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2704..3100): Gly
nrpys: Gly
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- gly (Gly)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DILQLGVIWK
- Nearest Stachelhaus code(s):
- Gly DILQLGVIWK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3756..4144): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLFNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLFNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4800..5198): bAla
nrpys: bAla
- SVM prediction details:
-
- Predicted physicochemical class:
- N/A
- Large clusters prediction:
- N/A
- Small clusters prediction:
- N/A
- Single AA prediction:
- tyr (Tyr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- VDTVVSFGDK
- Nearest Stachelhaus code(s):
- bAla VDTVVSFGDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
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