BGC0001389

BGC0001389: cichopeptin biosynthetic gene cluster from Pseudomonas cichorii

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Location: 1 - 84,760 nt. (total: 84,760 nt).
This entry is originally from NCBI GenBank KJ513094.1.

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core biosynthetic genes

additional biosynthetic genes

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Gene details

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General

Compounds

Genes

NRP

History

NRPS/PKS domains

KnownClusterBlast

General information about the BGC

MIBiG accession	BGC0001389
Short description	cichopeptin biosynthetic gene cluster from Pseudomonas cichorii
Status	Minimal annotation: no A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s) Completeness: Unknown Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)	NRP
Loci	NCBI GenBank: KJ513094.1
Compounds	cichopeptin
Species	Pseudomonas cichorii [taxonomy]
References	Characterization of Cichopeptins, New Phytotoxic Cyclic Lipodepsipeptides Produced by Pseudomonas cichorii SF1-54 and Their Role in Bacterial Midrib Rot Disease of Lettuce. Huang CJ et al., Mol Plant Microbe Interact (2015) PMID:25961750

Chemical products information

cichopeptin

(no structure information available)

List of genes involved in compound(s) production

Identifiers	Position	Product	Extra
AHZ34244.1	1 - 1434 (+)	PseA	copy AA seq copy Nt seq
AHZ34245.1	1503 - 2543 (+)	PseB	copy AA seq copy Nt seq
AHZ34246.1	2540 - 5587 (+)	PseC	copy AA seq copy Nt seq
AHZ34247.1	5641 - 6246 (+)	CmaU	copy AA seq copy Nt seq
AHZ34238.1	6986 - 21700 (+)	CipA	copy AA seq copy Nt seq
AHZ34239.1	21826 - 31338 (+)	CipB	copy AA seq copy Nt seq
AHZ34240.1	31355 - 35977 (+)	CipC	copy AA seq copy Nt seq
AHZ34241.1	36115 - 49032 (+)	CipD	copy AA seq copy Nt seq
AHZ34242.1	49256 - 58486 (+)	CipE	copy AA seq copy Nt seq
AHZ34243.1	58668 - 80042 (+)	CipF	copy AA seq copy Nt seq
AHZ34248.1	80124 - 81299 (+)	MacA	copy AA seq copy Nt seq
AHZ34249.1	81296 - 83260 (+)	MacB	copy AA seq copy Nt seq
AHZ34250.1	83419 - 84261 (-)	LuxR	copy AA seq copy Nt seq

NRP-specific information

Subclass	N/A
Cyclic?	no

NRP-synthases

Gene	Modules
AHZ34238.1	Module ? Specificity: threonine Evidence for specificity: Structure-based inference Sequence-based prediction
	Module ? Specificity: proline Evidence for specificity: Structure-based inference Sequence-based prediction
	Module ? Specificity: alanine Evidence for specificity: Structure-based inference Sequence-based prediction
	Module ? Specificity: alanine Evidence for specificity: Structure-based inference Sequence-based prediction
AHZ34239.1	Module ? Specificity: alanine Evidence for specificity: Structure-based inference Sequence-based prediction
	Module ? Specificity: alanine Evidence for specificity: Structure-based inference Sequence-based prediction
	Module ? Specificity: valine Evidence for specificity: Structure-based inference Sequence-based prediction
AHZ34240.1	Module ? Specificity: threonine Evidence for specificity: Structure-based inference Sequence-based prediction
AHZ34240.1	Module ? Specificity: glycine Evidence for specificity: Structure-based inference Sequence-based prediction
AHZ34241.1	Module ? Specificity: valine Evidence for specificity: Structure-based inference Sequence-based prediction
	Module ? Specificity: isoleucine Evidence for specificity: Structure-based inference Sequence-based prediction
	Module ? Specificity: glycine Evidence for specificity: Structure-based inference Sequence-based prediction
	Module ? Specificity: alanine Evidence for specificity: Structure-based inference Sequence-based prediction
AHZ34242.1	Module ? Specificity: valine Evidence for specificity: Structure-based inference Sequence-based prediction
	Module ? Specificity: alanine Evidence for specificity: Structure-based inference Sequence-based prediction
	Module ? Specificity: valine Evidence for specificity: Structure-based inference Sequence-based prediction
AHZ34243.1	Module ? Specificity: threonine Evidence for specificity: Structure-based inference Sequence-based prediction
	Module ? Specificity: threonine Evidence for specificity: Structure-based inference Sequence-based prediction
	Module ? Specificity: alanine Evidence for specificity: Structure-based inference Sequence-based prediction
	Module ? Specificity: 2,4-diaminobutyric acid Evidence for specificity: Structure-based inference Sequence-based prediction
	Module ? Specificity: serine Evidence for specificity: Structure-based inference Sequence-based prediction
	Module ? Specificity: isoleucine / valine / leucine Evidence for specificity: Structure-based inference Sequence-based prediction

Annotation changelog

MIBiG version	Submitter	Notes
1.3	Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).	Submitted
2.0	Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).	Migrated from v1.4
3.0	Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).	Updated bioactivity data Added NRP substrate specificities
3.1	Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).	Update chemical activity to schema version 2.11

Detailed domain annotation

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