AL066_08460: Thr - Thr - Asp
AMP-binding (960..1366): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2026..2432): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3117..3521): Asp
nrpys: Asp
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
- Small clusters prediction:
- asp,asn (Asp, Asn)
- Single AA prediction:
- asp (Asp)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DMKDLGMVDK
- Nearest Stachelhaus code(s):
- Asp DMKDLGMVDK (100% 8Å match)
- OH-Asp or Asp DMKDLGMVDK (94% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AL066_08465: Ser - Dab - Gly - X
AMP-binding (472..872): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHLSLIDK
- Nearest Stachelhaus code(s):
- Ser DVWHLSLIDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1529..1930): Dab
nrpys: Dab
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLEHNTTVSK
- Nearest Stachelhaus code(s):
- Dab DLEHNTTVSK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2614..3016): Gly
nrpys: Gly
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- gly (Gly)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DILQLGVIWK
- Nearest Stachelhaus code(s):
- Gly DILQLGVIWK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3679..4073): X
nrpys: Hse
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLKNVGSDVK
- Nearest Stachelhaus code(s):
- Hse DLKNVGSDVK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AL066_08490: Thr
AMP-binding (26..427): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWSVGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWSVGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AL066_08505: Thr - Pro - Ala - Ala - Ala - Val - Ala - Thr - Ser
AMP-binding (472..873): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1557..1960): Pro
nrpys: Pro
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Cyclic aliphatic chain (polar NH2 group) (Pro, Hpr)
- Small clusters prediction:
- pro (Pro)
- Single AA prediction:
- pro (Pro)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVQYIAHVTK
- Nearest Stachelhaus code(s):
- Pro DVQYIAHVTK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2641..3026): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3705..4090): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4769..5154): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (5832..6225): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DALWIGGTFK
- Nearest Stachelhaus code(s):
- Val DALWIGGTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (6905..7290): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (7969..8374): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (9055..9455): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHLSLIDK
- Nearest Stachelhaus code(s):
- Ser DVWHLSLIDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AL066_08510: Val - Ile - Ser - Ala
AMP-binding (570..960): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DALWIGGTFK
- Nearest Stachelhaus code(s):
- Val DALWIGGTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1640..2035): Ile
nrpys: Ile
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- ile (Ile)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAMFLGCTYK
- Nearest Stachelhaus code(s):
- Ile DAMFLGCTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2714..3114): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHMSLVDK
- Nearest Stachelhaus code(s):
- Ser DVWHMSLVDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3796..4181): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AL066_08515: Val - Ala - Val - Thr - Thr - Ala - Dab - Ser - Ile
AMP-binding (555..947): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DALWIGGTFK
- Nearest Stachelhaus code(s):
- Val DALWIGGTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1629..2014): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2694..3086): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DALWIGGTFK
- Nearest Stachelhaus code(s):
- Val DALWIGGTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3767..4175): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4856..5259): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (5941..6326): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (6982..7383): Dab
nrpys: Dab
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLEHNTTVSK
- Nearest Stachelhaus code(s):
- Dab DLEHNTTVSK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (8041..8441): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHMSLVDK
- Nearest Stachelhaus code(s):
- Ser DVWHMSLVDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (9121..9515): Ile
nrpys: Ile
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- ile (Ile)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAMFMGCTFK
- Nearest Stachelhaus code(s):
- Ile DAMFMGCTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
reset view
zoom to selection