BGC0001425: myxochromide A biosynthetic gene cluster from Myxococcus xanthus DK 1622
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Location: 1 - 44,135 nt. (total: 44,135 nt).
This entry is originally from NCBI GenBank KX622595.1.

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core biosynthetic genes
additional biosynthetic genes
transport-related genes
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resistance
TTA codons
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Gene details
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General
Compounds
Genes
Polyketide
NRP
History
NRPS/PKS domains
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0001425
Short description myxochromide A biosynthetic gene cluster from Myxococcus xanthus DK 1622
Status Minimal annotation: no
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: complete
Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • NRP (Cyclic depsipeptide)
  • Polyketide (Polyene)
Loci NCBI GenBank: KX622595.1
Compounds
  • myxochromide A
Species Myxococcus xanthus DK 1622 [taxonomy]
References
Chemical products information
myxochromide A
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C45H63N7O9
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • APZ78763.1
 1 - 1272 (-) glycosyl hydrolase
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  • APZ78764.1
 1279 - 2220 (+) multidrug ABC transporter ATP-binding protein
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  • APZ78765.1
 2230 - 5832 (+) membrane protein
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  • APZ78766.1
 5837 - 6373 (-) uncharacterized protein
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  • APZ78767.1
  • mchA
 7007 - 13465 (+) polyketide synthase
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  • APZ78768.1
  • mchB
 13462 - 22608 (+) nonribosomal peptide synthetase
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  • APZ78769.1
  • mchC
 22641 - 36038 (+) nonribosomal peptide synthetase
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  • APZ78770.1
  • mchD
 36035 - 36499 (+) membrane protein
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  • APZ78771.1
 36585 - 38090 (-) ATP-dependent RNA helicase RhlE
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  • APZ78772.1
 38440 - 40548 (-) elongation factor G
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  • APZ78773.1
 40983 - 42173 (-) cyclic nucleotide-binding protein
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  • APZ78774.1
 42292 - 42768 (-) peptidyl-prolyl cis-trans isomerase
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  • APZ78775.1
 42939 - 44135 (+) metallophosphatase
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Polyketide-specific information
Subclass Polyene
Starter unit Acetyl-CoA
Cyclic? no
Polyketide-synthases
Genes Properties Modules
mchA Synthase subclass: Iterative type I
Iterative PKS type: Partially reducing, Unknown
Iteration counts: 9
Module 1
Specificity: Malonyl-CoA
Evidence for specificity: Structure-based inference
Genes: mchA
Core domains: Ketosynthase, Acyltransferase, Dehydratase, Enoylreductase, Ketoreductase, Thiolation (ACP/PCP)
KR-domain stereochemistry: Unknown
Non-canonical activity:
  • Iterated
Evidence for non-canonical activity:
  • Structure-based inference
NRP-specific information
Subclass Cyclic depsipeptide
Cyclic? yes
Release type
  • Macrolactonization
Thioesterase genes
  • mchC (Type I)
NRP-synthases
Gene Modules
mchB
Module 2
Specificity: threonine
Evidence for specificity:
  • Structure-based inference
Condensation domain type: LCL
Modification domains: Methylation
Module 3
Specificity: alanine
Evidence for specificity:
  • Structure-based inference
Condensation domain type: LCL
mchC
Module 4
Specificity: leucine
Evidence for specificity:
  • Structure-based inference
Condensation domain type: DCL
Module 5
Specificity: proline
Evidence for specificity:
  • Structure-based inference
Condensation domain type: LCL
Module 6
Specificity: alanine
Evidence for specificity:
  • Structure-based inference
Condensation domain type: LCL
Module 7
Specificity: glutamine
Evidence for specificity:
  • Structure-based inference
Condensation domain type: LCL
Annotation changelog
MIBiG version Submitter Notes
1.4
  • Hidden contributor (ID: W3AST4BMPVTIWZ3NNIXB2T6Y, no GDPR consent given).
  • Submitted
2.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Migrated from v1.4
3.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Corrected NRP module activity
  • Removed gene annotations, including 'extra' genes, which duplicated NCBI annotations
  • Changed gene identifiers used to consistently be 'gene' names
  • Changed amino acid substrates to lower case
Detailed domain annotation
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