BGC0001488: 4-formylaminooxyvinylglycine biosynthetic gene cluster from Pseudomonas fluorescens WH6
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 5,551,843 - 5,565,594 nt. (total: 13,752 nt).
This entry is originally from NCBI GenBank CM001025.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
History
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0001488
Short description 4-formylaminooxyvinylglycine biosynthetic gene cluster from Pseudomonas fluorescens WH6
Status Minimal annotation: yes
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: Unknown
Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • Other
Loci NCBI GenBank: CM001025.1
Compounds
  • 4-formylaminooxyvinylglycine
Species Pseudomonas fluorescens WH6 [taxonomy]
References
Chemical products information
4-formylaminooxyvinylglycine
Copy SMILES
C5H8N2O4
Chemical database entries
NPAtlas
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • PFWH6_5247
  • EFQ61004.1
  • tam
 5551843 - 5552604 (-) trans-aconitate 2-methyltransferase
copy AA seq
copy Nt seq
  • PFWH6_5248
  • EFQ61005.1
  • ydcR
 5552648 - 5554102 (-) transcriptional regulator, GntR family
copy AA seq
copy Nt seq
  • PFWH6_5249
  • EFQ61006.1
 5554410 - 5555417 (+) hypothetical protein
copy AA seq
copy Nt seq
  • PFWH6_5250
  • EFQ61007.1
 5555401 - 5555514 (+) hypothetical protein
copy AA seq
copy Nt seq
  • PFWH6_5251
  • EFQ61008.1
 5555598 - 5557742 (+) hypothetical protein
copy AA seq
copy Nt seq
  • PFWH6_5252
  • EFQ61009.1
  • strB1
 5557760 - 5558803 (+) Inosamine-phosphate amidinotransferase 1
copy AA seq
copy Nt seq
  • PFWH6_5253
  • EFQ61010.1
  • yfiK
 5558817 - 5559440 (+) transporter, LysE family
copy AA seq
copy Nt seq
  • PFWH6_5254
  • EFQ61011.1
 5559531 - 5561372 (+) carbamoyl transferase of the NodU/CmcH family
copy AA seq
copy Nt seq
  • PFWH6_5255
  • EFQ61012.1
 5561406 - 5561549 (+) hypothetical protein
copy AA seq
copy Nt seq
  • PFWH6_5256
  • EFQ61013.1
 5561576 - 5562895 (+) hypothetical protein
copy AA seq
copy Nt seq
  • PFWH6_5257
  • EFQ61014.1
 5562963 - 5563565 (+) hypothetical protein
copy AA seq
copy Nt seq
  • PFWH6_5258
  • EFQ61015.1
  • yahN
 5563646 - 5564275 (+) threonine efflux protein
copy AA seq
copy Nt seq
  • PFWH6_5259
  • EFQ61016.1
  • yfiK
 5564363 - 5564974 (+) transporter, LysE family
copy AA seq
copy Nt seq
  • PFWH6_5260
  • EFQ61017.1
  • ssb
 5565079 - 5565594 (-) single-strand DNA-binding protein
copy AA seq
copy Nt seq
Annotation changelog
MIBiG version Submitter Notes
1.4
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Submitted
2.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Migrated from v1.4
  • Updated reference publication(s) (MIBiG Annotathon)
  • Updated compound(s) information (NPAtlas curation)
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.