jesA: Thr - Pro - Ile - Val - Ala
AMP-binding (464..868): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1553..1965): Pro
nrpys: Pro
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Cyclic aliphatic chain (polar NH2 group) (Pro, Hpr)
- Small clusters prediction:
- pro (Pro)
- Single AA prediction:
- pro (Pro)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVQYIAHVVK
- Nearest Stachelhaus code(s):
- Pro DVQYIAHVVK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2646..3042): Ile
nrpys: Ile
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- ile (Ile)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAMFLGCTYK
- Nearest Stachelhaus code(s):
- Ile DAMFLGCTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3723..4116): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DALWIGGTFK
- Nearest Stachelhaus code(s):
- Val DALWIGGTFK (97% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4798..5188): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
jesB: Ala - Ala - Val - Ser - Ala
AMP-binding (568..958): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1641..2031): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2712..3105): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DALWIGGTFK
- Nearest Stachelhaus code(s):
- Val DALWIGGTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3785..4188): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHMSLVDK
- Nearest Stachelhaus code(s):
- Ser DVWHMSLVDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4870..5260): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
jesC: Val - Ala - Leu - Thr - Thr - Ala - Dab - Ser - Phe
AMP-binding (531..923): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DALWIGGTFK
- Nearest Stachelhaus code(s):
- Val DALWIGGTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1605..1995): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2678..3072): Leu
nrpys: Leu
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- leu (Leu)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAWFLGNVVK
- Nearest Stachelhaus code(s):
- Leu DAWFLGNVVK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3752..4157): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4839..5244): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (5926..6316): Ala
nrpys: Ala
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- ala (Ala)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLYNNALTYK
- Nearest Stachelhaus code(s):
- Ala DLYNNALTYK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (6975..7385): Dab
nrpys: Dab
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLEHNTTVSK
- Nearest Stachelhaus code(s):
- Dab DLEHNTTVSK (97% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (8043..8446): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHMSLVDK
- Nearest Stachelhaus code(s):
- Ser DVWHMSLVDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (9128..9527): Phe
nrpys: Phe
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aromatic (Phe, Tyr, diOH-Bz, Ph-Gly, bOH-Tyr)
- Large clusters prediction:
- Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
- Small clusters prediction:
- N/A
- Single AA prediction:
- tyr (Tyr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAPIMGGTCK
- Nearest Stachelhaus code(s):
- Phe DAPIMGGTCK (85% 8Å match)
- Stachelhaus code match:
- 100% (strong)
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