lesA: Thr - Arg - Ser - Gly - Phe - Leu - Arg
AMP-binding (459..867): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNVGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNVGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1513..1925): Arg
nrpys: Arg
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- N/A
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DTEDVGAVDK
- Nearest Stachelhaus code(s):
- Arg DTEDVGAVDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3039..3451): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHVSLVDK
- Nearest Stachelhaus code(s):
- Ser DVWHVSLVDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4103..4501): Gly
nrpys: Gly
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- gly (Gly)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DILQLGLIWK
- Nearest Stachelhaus code(s):
- Gly DILQLGLIWK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (5169..5567): Phe
nrpys: Phe
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aromatic (Phe, Tyr, diOH-Bz, Ph-Gly, bOH-Tyr)
- Large clusters prediction:
- Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
- Small clusters prediction:
- Unpolar aromatic ring (Phe, Trp)
- Single AA prediction:
- phe (Phe)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAWTIAAVCK
- Nearest Stachelhaus code(s):
- Phe DAWTIAAVCK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (7113..7514): Leu
nrpys: Leu
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aromatic (Phe, Tyr, diOH-Bz, Ph-Gly, bOH-Tyr)
- Large clusters prediction:
- Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAMLIGAICK
- Nearest Stachelhaus code(s):
- Leu DAMLIGAICK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (8171..8581): Arg
nrpys: Arg
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- N/A
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DTEDVGCVDK
- Nearest Stachelhaus code(s):
- Arg DTEDVGCVDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
lesB: Glu - Gln - Trp - X - Thr
AMP-binding (462..864): Glu
nrpys: Glu
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- N/A
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHVGSIGK
- Nearest Stachelhaus code(s):
- Glu DVWHVGSIGK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1526..1935): Gln
nrpys: Gln
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
- Small clusters prediction:
- glu,gln (Glu, Gln)
- Single AA prediction:
- gln (Gln)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAWQFGLIQK
- Nearest Stachelhaus code(s):
- Gln DAWQFGLIQK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3053..3453): Trp
nrpys: Trp
- SVM prediction details:
-
- Predicted physicochemical class:
- N/A
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAAIIGEVWK
- Nearest Stachelhaus code(s):
- Trp DAAIIGEVWK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4600..5000): X
nrpys: Ile, Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAYFWGVTFK
- Nearest Stachelhaus code(s):
- Ile or Val DAYFWGVTFK (100% 8Å match)
- Val DAYFWGVTFK (88% 8Å match)
- Ile DAYFWGVTFK (85% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (5652..6060): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNVGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNVGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
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