BGC0001667: microcystin-LR biosynthetic gene cluster from Fischerella sp. CENA161
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Location: 1 - 55,137 nt. (total: 55,137 nt).
This entry is originally from NCBI GenBank KX891213.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
Biosynthesis
History
NRPS/PKS domains
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0001667
Short description microcystin-LR biosynthetic gene cluster from Fischerella sp. CENA161
Status Quality: questionable
The quality level of this entry.

Status: active
The status of this entry.

Completeness: unknown
Whether the entry covers everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • NRPS (Type I)
  • PKS (Unknown)
Loci
KX891213.1
via
Compounds
  • microcystin-LR
  • microcystin-FR
  • microcystin-LA
  • microcystin-LAba
  • microcystin-LM
  • microcystin-LV
  • microcystin-LL
Species Fischerella sp. CENA161 [taxonomy]
References
Chemical products information
microcystin-LR Evidence:
Copy SMILES
C49H74N10O12
microcystin-FR Evidence:
Copy SMILES
C52H72N10O12
Chemical database entries
NPAtlas
microcystin-LA Evidence:
Copy SMILES
C46H67N7O12
microcystin-LAba Evidence:
Copy SMILES
C47H69N7O12
microcystin-LM Evidence:
Copy SMILES
C48H72N7O12S1
microcystin-LV Evidence:
(no structure information available)
microcystin-LL Evidence:
Copy SMILES
C49H73N7O12
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • AQH32478.1
  • mcyH
1 - 1773 (-) ABC transporter
    copy AA seq
    copy Nt seq
    • AQH32479.1
    • mcyI
    1795 - 2823 (-) phosphoglycerate dehydrogenase
      copy AA seq
      copy Nt seq
      • AQH32480.1
      • mcyF
      2849 - 3637 (-) amino acid racemase
        copy AA seq
        copy Nt seq
        • AQH32481.1
        • mcyE
        3685 - 14220 (-) hybrid polyketide synthase/peptide synthetase
          copy AA seq
          copy Nt seq
          • AQH32482.1
          • mcyD
          14372 - 25990 (-) type 1 polyketide synthase
            copy AA seq
            copy Nt seq
            • AQH32483.1
            • mcyG
            26148 - 34067 (-) hybrid peptide synthetase/polyketide synthase
              copy AA seq
              copy Nt seq
              • AQH32484.1
              • mcyA
              35371 - 43734 (+) peptide synthetase
                copy AA seq
                copy Nt seq
                • AQH32485.1
                • mcyB
                43752 - 50162 (+) peptide synthetase
                  copy AA seq
                  copy Nt seq
                  • AQH32486.1
                  • mcyC
                  50165 - 54016 (+) peptide synthetase
                    copy AA seq
                    copy Nt seq
                    • AQH32487.1
                    • mcyJ
                    54075 - 55016 (+) O-methyl transferase
                      copy AA seq
                      copy Nt seq
                      Biosynthesis information

                      Biosynthetic modules

                      Name
                      Unk01
                      Type
                      nrps-type1
                      Genes
                      mcyE
                      Substrates
                      glutamic acid (evidence: Structure-based inference, Sequence-based prediction, Mass spectrometry)
                      Integrated Monomers
                      Domains
                      adenylation
                      Name
                      Unk02
                      Type
                      nrps-type1
                      Genes
                      mcyA
                      Substrates
                      serine (evidence: Structure-based inference, Sequence-based prediction, Mass spectrometry)
                      Integrated Monomers
                      Domains
                      adenylation
                      Name
                      Unk03
                      Type
                      nrps-type1
                      Genes
                      mcyA
                      Substrates
                      alanine (evidence: Structure-based inference, Sequence-based prediction, Mass spectrometry)
                      Integrated Monomers
                      Domains
                      adenylation
                      Name
                      Unk04
                      Type
                      nrps-type1
                      Genes
                      mcyB
                      Substrates
                      leucine (evidence: Structure-based inference, Sequence-based prediction, Mass spectrometry)
                      Integrated Monomers
                      Domains
                      adenylation
                      Name
                      Unk05
                      Type
                      nrps-type1
                      Genes
                      mcyB
                      Substrates
                      tyrosine (evidence: Structure-based inference, Sequence-based prediction, Mass spectrometry)
                      Integrated Monomers
                      Domains
                      adenylation
                      Name
                      Unk06
                      Type
                      nrps-type1
                      Genes
                      mcyC
                      Substrates
                      serine (evidence: Structure-based inference, Sequence-based prediction, Mass spectrometry)
                      Integrated Monomers
                      Domains
                      adenylation
                      Annotation changelog

                      Entry version: 3

                      Date
                      Changes
                      Submitters
                      Reviewers
                      Added NRP substrate specificities
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

                      Entry version: 2

                      Date
                      Changes
                      Submitters
                      Reviewers
                      Migrated from v1.4
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                      Updated compound(s) information (NPAtlas curation)
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

                      Entry version: 1

                      Date
                      Changes
                      Submitters
                      Reviewers
                      Submitted
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                      Detailed domain annotation
                      Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
                      A domain glossary is available here, and an explanation of the visualisation is available here.
                      Selected features only
                      Show module domains
                      Similar known gene clusters from MIBiG 4.0
                      Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
                      Click on reference genes to show details of similarities to genes within the current region.
                      Click on an accession to open that entry in the MiBIG database.